Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02623 ATGGACCAGGCCGAATTAACCACTGAACAGGTTCTGAGGAGGGATATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGGACAAGCCTTCAGCTCTTGAGGCGTTACGATCACCGATCAGAAAGTCACAGAGCACAATTGCTCGATGATGATGGTCCGGCTTATGTTCGTGTGTTTGTTCGTGTTTTGCGTGATATTTTCAAAGAAGATACTGTAGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCAGCAAACCCGAAAAGGGCTAGACTGTTTCATGACAGCACCCTTGCAGATGAAGATACTTATGAGCCTTTCCTAAGGTTGCTCCGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTGTAATTGTTAGTGTCAGGCCAAAAAATCAGACTGGCATTACATCAAATGGAGAAGCATCAAACGGGAAGAAACCGTTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGAAGCAAGGTTTCTTTCTCACTAGATCAACCACATCAGAAAAATTTACAAACATATTGCTGATGCACCTAATTACATCAACTTATGGACTGAAGAAACCTTCTCATCCTAGTCGTGGAGTACCAACTGCTATCAATTGCTTAGCAAGTCTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAAGCAGATGGGGTCAAGTTGCTTGTGCCATTGATTTCTCCTGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAGACATGTCTCTGCATATGGCTCTTATCCTATTTTGAGCCGGCAATTGAATATTTGGCTACTTCAAGGACCCTTCCAAGACTTATTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCTTGACTCTTAAAAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGCCACAAGTTGTTCAGAATTTAAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTAAATTCCCTGGAAGAAGGGCTTAAGGATAACATCAAGAAACTAAGTTCTTATGATAAATACAAGCAAGAAGTTCTTCTTGGCAATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGGGAAAATATAACCAATTTTGAAGAGAATGATTTCCAGATTCTAAGGGTCCTATTAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAGTACCATCCGGCTGGGCGGATTATTGTGTCGGACCTAAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAGAATGCTGAGGTTACTAAAAGTGCACTGCTCTGCATCCAACGGCTTTTCTTGGGTGCAAAGTATGCAAGCTTCTTGCAGGCTTAG 1446 0.4198 MDQAELTTEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSTLADEDTYEPFLRLLRKGNWFIQEKSCKILAVIVSVRPKNQTGITSNGEASNGKKPFTTIDDVLIGLVKWLCEQKQGFFLTRSTTSEKFTNILLMHLITSTYGLKKPSHPSRGVPTAINCLASLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYFEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQNLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSYDKYKQEVLLGNLDWSPMHKDPIFWRENITNFEENDFQILRVLLTILDTSNDPRTLAVACFDISQFIQYHPAGRIIVSDLKAKERVMKLMNHENAEVTKSALLCIQRLFLGAKYASFLQA. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02623 481 SUPERFAMILY ARM repeat 8 471 IPR016024 -
Seca12g02623 481 PIRSF V-ATP_synth_H 1 480 IPR004908 GO:0000221|GO:0046961|GO:1902600
Seca12g02623 481 Pfam V-ATPase subunit H 4 352 IPR004908 GO:0000221|GO:0046961|GO:1902600
Seca12g02623 481 Gene3D - 373 473 IPR038497 -
Seca12g02623 481 Pfam V-ATPase subunit H 358 470 IPR011987 GO:0000221|GO:1902600
Seca12g02623 481 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 480 IPR004908 GO:0000221|GO:0046961|GO:1902600
Seca12g02623 481 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 427 434 IPR018506 GO:0020037
Seca12g02623 481 FunFam V-type proton ATPase subunit H 372 473 - -
Seca12g02623 481 SMART arm_5 224 269 IPR000225 GO:0005515
Seca12g02623 481 SMART arm_5 270 311 IPR000225 GO:0005515
Seca12g02623 481 SMART arm_5 431 471 IPR000225 GO:0005515
Seca12g02623 481 Gene3D - 4 360 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02623 Seca-Chr12 43786061 43793898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02623 1 481 Primary Pumps ATPases(2) AT3G42050 74.636 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02623 K02144 - gmx:100788723 828.165