Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02622 ATGGGTTGGTTTACCAAGTTACTTAAGGGTTCCAACCATAAATCTTCTGGCCGACACGGGAGATATGGAGATGACAGAATTTCAAGTAATCATGATTATTCAGCGGATGATCTAACAGATATTGAGAGAGAAGAAATTGATCGTGCAATAGCGCTCTCTCTTTCAGAGGAAGATCCGAAAGGGAAAAAAGTTATTGAGGTTGACTCTGAATCTGAAGATGAAGAACTGTGTCAAATTGATGAGGAGGAAGATGACCATCATGGTGATGTTCAACAAGATGAAGATGACCATGTTGCTAAAATTCAACAGGATGAAGACAAAAATCTTGCAGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCTCCTCCTCGATCTGACTTTGATTCTTTCTTTCAACCTTTTTCAAACCTCTTTCCACCTGTATACAGAGTCTGTGCTGGCTGCAATGCTGAGATTGGCCGTGGAAGATTTTTGAGTTGCATGGGAGCTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGCAAATTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAGATCGCCGTTACCATAAATCATGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGAACTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCAACAAAAATATTGTCCATCGCATGAGCGTGATGGCACTCCTCGATGTTGTAGCTGTCAAAGAATGGAGTCAAAGGACACAAAATATCTGTTGCTTGATGATGGTCGAAAACTGTGTCTGGAGTGTCTGGACTCAGCCATTATGGATACTCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTCTATGAAGGTTTAAATATGAAAATAGAGCAACAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAAAAGAATGGTCATCATCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAAACTGTCTCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGCTACCAGGTCATAGATATGATAACTGAGCCTTTTAGGCTGACCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGATCAATCCTGGCTCATGAAATGATGCATGCTTGGCTTAGGCTTAAAGGCTATGGCAATCTGAGGCCAGAGGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTACCTCTGGAAGTGATGTAGCATCGTCATCGTCTTCATCTTCATCATCTTCTTCCTCATCATCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAATTTGGTGAGTTTTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCCTATGGAGATGGATTCAGACAGGGTAACCAGGCCGTACTCAAGTATGGACTTAGAAGGACCCTTGACCATATCCGATTGACTGGAAGCTATCCATATTGA 1569 0.4226 MGWFTKLLKGSNHKSSGRHGRYGDDRISSNHDYSADDLTDIEREEIDRAIALSLSEEDPKGKKVIEVDSESEDEELCQIDEEEDDHHGDVQQDEDDHVAKIQQDEDKNLAEVQLEEDEQLARAIQESLSIGSPPRSDFDSFFQPFSNLFPPVYRVCAGCNAEIGRGRFLSCMGAVWHPECFCCHACKLPITDYEFSMSGDRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWQQKYCPSHERDGTPRCCSCQRMESKDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVSTILRRPRIGAGYQVIDMITEPFRLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESELYSTSGSDVASSSSSSSSSSSSSSSKKGKRSDFEKKFGEFFKHQIESDSSSAYGDGFRQGNQAVLKYGLRRTLDHIRLTGSYPY. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02622 522 ProSiteProfiles LIM domain profile. 154 214 IPR001781 -
Seca12g02622 522 PANTHER PROTEIN DA1-RELATED 2 3 521 IPR045218 -
Seca12g02622 522 MobiDBLite consensus disorder prediction 52 75 - -
Seca12g02622 522 MobiDBLite consensus disorder prediction 446 464 - -
Seca12g02622 522 Pfam LIM domain 156 210 IPR001781 -
Seca12g02622 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 238 - -
Seca12g02622 522 SMART uim 115 134 IPR003903 -
Seca12g02622 522 SMART uim 41 60 IPR003903 -
Seca12g02622 522 SMART lim_4 155 207 IPR001781 -
Seca12g02622 522 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 115 134 IPR003903 -
Seca12g02622 522 Gene3D Cysteine Rich Protein 152 213 - -
Seca12g02622 522 MobiDBLite consensus disorder prediction 1 39 - -
Seca12g02622 522 FunFam Protein DA1-related 1 150 209 - -
Seca12g02622 522 CDD LIM 183 258 - -
Seca12g02622 522 CDD LIM_DA1 156 208 - -
Seca12g02622 522 ProSitePatterns LIM zinc-binding domain signature. 156 190 IPR001781 -
Seca12g02622 522 MobiDBLite consensus disorder prediction 52 69 - -
Seca12g02622 522 MobiDBLite consensus disorder prediction 446 468 - -
Seca12g02622 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 181 - -
Seca12g02622 522 MobiDBLite consensus disorder prediction 17 39 - -
Seca12g02622 522 Pfam Protein DA1 305 517 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02622 Seca-Chr12 43777319 43783188 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g02622 DA1-like 4.3e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02622 - - gmx:100806605 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02622 12 43777319 43783188 Seca12g02622 12 43777319 43783188 ECH
Seca12g02622 12 43777319 43783188 Seca12g02622 12 43777319 43783188 PCT