Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02621 ATGGGAATAGCAACACCTACAGCACTTCCTTCCACTCTCTCTCATTCAAAGACACATTCGATCTTTTATTCCAATTCTATGTCCCAAGATTACCACAACCAGCAAGGAATCTTCACCTTCTCCAACGGCTTCGAGAGATCCAGTCATCCACAGCAGCAACAAAGGGACAAAGTGAGGGTGCAAGGCTTCCAACCACCACTCGTAGGCATAGAAGACGAACCGGGAGGCCTTCCGGTGTATGAAACCGGAGGGATGTTATCGGAGATGTTCAATTTCCCTCCCGGCGCTGCTGAATTGTTGGAGCAGCAACAACAACAGCAGCAAGCAATGACGACGACGTTTCGATCGTCGTCCTCAAGAGGTATGGCAGTTGGGAGTTCGAGTAGTGCGCATCATCATCATCAGATGTCAAGCATTAATGCCGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCCCCTCATCATACCACCACCACTCCCTCCACTTCCTCCACTCTCCATATGTTGCTCCCTAATCCCTCCACCACTTCCCTCCAAGGCTTTGGTTCTGGACAAGGAGGGTCTTTTGGTCAATTCACATGGGCTCAAGAAGGAGGCGCCACAACAACCCACCACCACCCGGCTGAAATTGGAGGTGTTGTCGAAGGACAAGGTCTTTCCTTGTCCTTATCCTCTTCCTTGCAGCATTTAGAAGCCGCGAAAGCTGAGGAATTGAGGATGGGGGATAGTGGTTTTCTATATTACAATCAAGGTGGTGGTGGTGGTTATCCTTACAAGAATCTTGGTCTTGGGAGTCATCATCATCATCACAACCAGGCATTGCATATACAAGGGGGAATAGGAATAGGACAGAGCCACCAGGGACATATTGGGTCATCCTTGAGTGTGGTCAATGTGTTGAGGAACTCTAGGTATGCAAAACCTGCACAGGAATTGCTTGAAGAATTCTGCAGTGTTGGGAGAGGACAGTTTAAGAAGAACAAGTTCAATAGACAGCTCTCAAACCCTAATTCAAATCCTGGTGGTGGTTCTTCATCTTCATCAAAAGATGTTGTTCCTCCTTTGTCAGCTGCTGATAGAATTGAGCATCAGAGAAGGAAAGTCAAACTTCTAACCATGCTTGACGAGGTGGACAGAAGATACAGCCATTACTGCGAGCAAATGCAGATGGTGGTGAACTCATTTGACATGGTGATGGGTTTTGGAGCAGCAGTTCCATACACATCATTAGCACAAAAAGCAATGTCTCGTCATTTTCGGTGTCTAAAGGATGCAATAACAGCACAGCTGAAGCACAGTTGTGAGTTGCTGGGAGAGAAAGATGGGGCAGGGAGTTCAGGTTTGACAAAAGGAGAGACCCCAAGGCTTAAGATGCTTGAACAAAGCCTAAGACAACAAAGAGCGTTCCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGATTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCAAGACAGACTGGGCTATCAAGAAATCAGGTATCAAATTGGTTCATTAATGCCAGGGTTCGATTGTGGAAACCCATGGTGGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAGGAAACAGAAGAGAGAGAAAAGAATCAAAGCAGTAGCAACAATAGTAATGGGCAAATAGCGCAAACTCCAACAGCTTCAACCACAACAACAACAGCGCCACCACCACCACCCCCACCATCAACAACAACACCAACGACAACAGGGAAAAGATCCGATATCAATGCCACTGAAAGCGACCCATCACTTGCAGCAATAAATAATAGACAAGGTTTCTCGGAAAACCAAGCAAAGATGATGCAGATGCACCATTCCACTTCCACCACCGTTATGGCAACCAAACCCACCGTGTCTGAGGTGGCGCCACCGGTTTCCGACTCGGTAATGATCACCGATGACACGTGTCGGCATGGTAGTAGCTTTGTTACGGGAGCAGATTACGGGACCGCTTCTGCTGCATCATCTTCTGACATTGGTTCGACTCTCATCAGATTTGGGACCACCGCCGGTGATGTGTCACTCACCTTAGGGCTACGTCACGCCGGGAACATGCCTGACAAAACCCCTTTCTCTCTTAGGGACTTTGGAGCTATTTAA 2223 0.4773 MGIATPTALPSTLSHSKTHSIFYSNSMSQDYHNQQGIFTFSNGFERSSHPQQQQRDKVRVQGFQPPLVGIEDEPGGLPVYETGGMLSEMFNFPPGAAELLEQQQQQQQAMTTTFRSSSSRGMAVGSSSSAHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPHHTTTTPSTSSTLHMLLPNPSTTSLQGFGSGQGGSFGQFTWAQEGGATTTHHHPAEIGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGFLYYNQGGGGGYPYKNLGLGSHHHHHNQALHIQGGIGIGQSHQGHIGSSLSVVNVLRNSRYAKPAQELLEEFCSVGRGQFKKNKFNRQLSNPNSNPGGGSSSSSKDVVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDMVMGFGAAVPYTSLAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGSSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEETEEREKNQSSSNNSNGQIAQTPTASTTTTTAPPPPPPPSTTTPTTTGKRSDINATESDPSLAAINNRQGFSENQAKMMQMHHSTSTTVMATKPTVSEVAPPVSDSVMITDDTCRHGSSFVTGADYGTASAASSSDIGSTLIRFGTTAGDVSLTLGLRHAGNMPDKTPFSLRDFGAI. 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02621 740 FunFam BEL1-like homeodomain protein 4 492 554 - -
Seca12g02621 740 MobiDBLite consensus disorder prediction 572 591 - -
Seca12g02621 740 Coils Coil 552 572 - -
Seca12g02621 740 MobiDBLite consensus disorder prediction 338 361 - -
Seca12g02621 740 MobiDBLite consensus disorder prediction 592 606 - -
Seca12g02621 740 SUPERFAMILY Homeodomain-like 491 556 IPR009057 -
Seca12g02621 740 Gene3D - 492 554 - -
Seca12g02621 740 MobiDBLite consensus disorder prediction 154 175 - -
Seca12g02621 740 ProSiteProfiles 'Homeobox' domain profile. 486 549 IPR001356 GO:0003677
Seca12g02621 740 MobiDBLite consensus disorder prediction 338 368 - -
Seca12g02621 740 MobiDBLite consensus disorder prediction 103 137 - -
Seca12g02621 740 SMART HOX_1 489 553 IPR001356 GO:0003677
Seca12g02621 740 MobiDBLite consensus disorder prediction 607 626 - -
Seca12g02621 740 SMART prehox3 303 437 IPR006563 -
Seca12g02621 740 Pfam Homeobox KN domain 506 545 IPR008422 GO:0003677|GO:0006355
Seca12g02621 740 CDD homeodomain 489 550 IPR001356 GO:0003677
Seca12g02621 740 Pfam Associated with HOX 308 436 IPR006563 -
Seca12g02621 740 MobiDBLite consensus disorder prediction 559 626 - -
Seca12g02621 740 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 145 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02621 Seca-Chr12 43593715 43599840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02621 1 536 Homeobox Transcription Factor Family AT4G36870 53.030 1.74e-153 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca12g02621 POX 2.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02621 - - mtr:11411247 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02621 12 43593715 43599840 Seca12g02621 12 43593715 43599840 ECH
Seca12g02621 12 43593715 43599840 Seca12g02621 12 43593715 43599840 PCT