Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02614 ATGGAAGAGCCTCATATGAAAAGGCAAGGTCAAGTGCAACACATTAGTTGTAAACACTTGACTAATTCAGATTGTAAAGGCAGTGGAGTTTGCTTCCATGATGAAATAAATGAAACTTTTTTAACCTCTGAGAACTCTCTCTCTATTGTGCGCATGATTGAAAGTGAATCACAAAACAACAGCAGGGAAGGAGAATTGCCATTTTCTGAACCCACTTGGCTGCAGGGGGACGAGTCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAAATGTGCAAGGGCTGACTGGCCATTATCAACCTTGAAAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTGATTTTTTTCCCTCACACAAGGAATTATTCTTGGGCTGATATGCTGCTTGTTCGATCAATTGATGAGTTTCCTCTGCCTATAGCATATAAAACCCATCAGGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCACGACGGTTTATAATGCAAAAGCTAGTCCTTGGCATGCTGAACATTGTCGATCAGCTTCATTCTAATGCTATGATAGAAACTGCTCGTGATGTCATGGTTTGGAAGGAATTTGCGATGCAGGCTTCTCACTGTAATGGTTATTCAGATTTTGGAAGAATGCTTCTAAAGCTGCGAAATAGCATAGTGCAGCTTTACATAAATGCTGACTGGATAAAACATTCGTCTTACTCTTGGGCTGAACGATGCCAGAATGCTAAGAGTGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGGTGCACTGGTGCAGCCAACATTAGGTTCTGAGTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCCACATTTCCTTCCTTTTCTAGTAGCAAGGACATGCAGCAGCAGACCTCTGATGGTTTATACCAAGTAAGCCTTCAGATTGGTAGAAAAAGACCCAAACTGGAAGTTCGTCGTGCAGATACACATGCTTCACTGGCGGTAACCAAGGGTTCAGACCACTCTATTACTCTTGAAACTGACCCAGGTTTCTTTAAGAATCAGGGCACATTGAGTGCACTGGCAGCTGAGACTTCTCAACAGGAAGATGTTAGAGAGGTACCTATAGCAACTGATTTACCTAGTAATTTGAGCAATCAATGGAATGAAATTGTAGTTGAGGCTGCAGATTCTGAGATCTTGGAAAGCATTGGAAAGGAATTAATACCAGTTGATGAAATGGCTGGTCAGAAATTTATAGAATCTGCTACTAAGAATCGGCAATGTATAGCTTATATTGAAGCCAAGGGGAGGCAGTGTGTGAGATGGGCAATTGATGGTGATGTATACTGTTGTGTGCATTCTCGTTTTTTGGGCAGCTCAGGAAAAGCCAAAAGAGCTGGTTTAATTGATACTCCAATATGTGGAGGCACAACTGTTCTTGGTAGTAGATGTAAGCATCATTCCGCTCCTGGCTCTTCATTCTGTAAGAAACACCAGCCCCATGCTGAAACAGAAGATACCACAAATTTAACCCGTCATACACTGAAGAGGAAACATGAAAATTATACTGGTTCAGATTGCTTGATTTGCAAAGAAATGGTATTGGTAAATGCTGATAGTCCACTGCAAGTAGATCCAGTGTTAGCCATTGATGGTGATTCTTTCCTTGGAAGAAACAGCTTTGGTGAGATGCCTATCCTTTCTGGCAGTGATCGTAAAGCAACAGAGCCACTTCACTGTATAGGATCTCCTCCCAATGATAATGAGGACCCTTGTTTGGAAGCACCAACCCGGTTTTTCTTGTACTGTGAAAAGCATCTTCCATGCTGGCTTAAATGTGCAAGAAATGGGAAGAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTGAGGGACTGCTGCTCATGGGAGGAAAAGGTGCATTTGCATAAAGCATGTGAGCTTTTTTACATGCTGTTCAAAAGCATTTTGTCGTTAAAAAGTCCATTACCTAAGGAAGTTCAATTCCAACAGGCCTTGACTGAAGCCTCACAAGATTCTCATGTTGGAGAATTATTTAGAAAGTTGGTTAATAGTGAAAAGGAGAATATAAAATTGAATTGGGGATTCAATGAGGACATATCCTCACTCATGGAAGGACCACCTCTCCTGCCTTCTACGATTAATGACAGCTTTGATGATGAAAATGTCATTAAGTGTAAGATCTGCAGTGCAAAATTTCCTGATGACCAAACACTTGGTAACCATTGGATAGACAATCATAAAAAGGAAACACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCTTGTGGTGATCATTTTGGAAATATGGAGCAATTATGGTTGCATGTCCTGTCAGTTCACCCTGTTGAACTTAAGCCATCAAAAGATCCTGAGCAGGGAACTTTGTCTAATGGCAAGGGTTCTCCAGAAAAACTTGAGCAGGGAAATTCAGTTTCATTGGACAATAATTCTGAGAATCCAGGTGATTTGCGGAAGTTCACTTGCAGGTTCTGTGGGTTGAAATTTAATTTACTACCTGACCTAGGTCGCCATCATCAAGCTGCTCATATGGAACGGAATATAGTCAAGAGCCGCCCTGCAAAGAAGGGAGTTCGTTATAATGCTCATAAATTAAAATCTGGCAGACTTGGTCCTAAATTTAAAAAAGGTCTCACAGCAGCATCATATAGGATCAAGAATGCAGGTAATGCTAATTTAAAGAGACATATTCAGTCAACAAAGTCACTTGACATGGGAGAAACAAGCATGCAACCTCAAGTAACTAAGACAGCAGATATTGGCGAACTGACAGAAAATCAATGCTCAGCAGTTTCAAAGACATTGTTTTCTGAGATTCAGAAGACTAAACCCCGGCCTAACAATCTTGATATTTTGTCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTAAAGCCTCGCTGGAGGAAAAATATGGAACTTTGCCGGAAATGCTCTATTTGAAGGCAGCAAGACTTTGCAGTGAGCATGAAATTCTAGTGAATTGGCATCAGGAGGGGTTCATTTGTCCAAGAGGTTGTAAGGAATTTAAGGATCAAAGACTGCTCTCTCCCTTAGCATCTGTTTCTAATGGCTTCCTAAAGCCAAAATCGGTTTCTAATGTATCAGATCCTGCAAGCAATGAGTTGGAAGTGGATGAGTTTCACTACATCATCAATTCACACCATTTAAAGTTAGGGTCCTTGCAAAAGGCTGTAGTATTATGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGAAATTCTAATTTCCCATCTTGGCTATGGGCCCAATGAGTATGATAATCTCTCTAGGCCTTGGGAGAGCTTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTTGTCTTGATTCCGAGAGTTTGCAACTGAGATGCGCTTGCTCATTTTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGCTAAGTTCCCATATGATGAAAATGGTCGAATAATACTGGAGGAAGGTTACCTTGTGTATGAGTGTAGCCGTATGTGCAGATGCAACAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGGGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGGAGTAAGGGCTGGTGAGGCTATTATGCGTGGAACATTTGTGTGTGAATACATTGGAGAGGTTTTACATGAGCAGGAGGCACACAACAGACGCAAAAGATATGGCAAAGAACATTGCAGTTATTTCTTTGAGGTTGATGCTCATATTAATGACATGAGTAGATTGCTCGAAGAACAGGCCCGATATGTCATTGATGCTACTAGATATGGAAATGTCTCTAGGTTCATCAATAACAGTTGCTCACCCAATCTTGTGAGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTATGCAAATCGAGATATTGCTTTGGGTGAAGAATTGACATTTAATTATCATTATGAGCTTGTGCCTGGAGAAGGATCTCCTTGCCATTGTGGATCTTCGAATTGCCGGGGACGCCTTTACTAG 4281 0.41 MEEPHMKRQGQVQHISCKHLTNSDCKGSGVCFHDEINETFLTSENSLSIVRMIESESQNNSREGELPFSEPTWLQGDESVALWVKWRGKWQAGIKCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIDEFPLPIAYKTHQAGLKMVKDLTVARRFIMQKLVLGMLNIVDQLHSNAMIETARDVMVWKEFAMQASHCNGYSDFGRMLLKLRNSIVQLYINADWIKHSSYSWAERCQNAKSAESVELLKEELFDSILWNDVNTLWGALVQPTLGSEWKTWKHDVMKWFSTFPSFSSSKDMQQQTSDGLYQVSLQIGRKRPKLEVRRADTHASLAVTKGSDHSITLETDPGFFKNQGTLSALAAETSQQEDVREVPIATDLPSNLSNQWNEIVVEAADSEILESIGKELIPVDEMAGQKFIESATKNRQCIAYIEAKGRQCVRWAIDGDVYCCVHSRFLGSSGKAKRAGLIDTPICGGTTVLGSRCKHHSAPGSSFCKKHQPHAETEDTTNLTRHTLKRKHENYTGSDCLICKEMVLVNADSPLQVDPVLAIDGDSFLGRNSFGEMPILSGSDRKATEPLHCIGSPPNDNEDPCLEAPTRFFLYCEKHLPCWLKCARNGKSRIISKEVFTEILRDCCSWEEKVHLHKACELFYMLFKSILSLKSPLPKEVQFQQALTEASQDSHVGELFRKLVNSEKENIKLNWGFNEDISSLMEGPPLLPSTINDSFDDENVIKCKICSAKFPDDQTLGNHWIDNHKKETQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGDHFGNMEQLWLHVLSVHPVELKPSKDPEQGTLSNGKGSPEKLEQGNSVSLDNNSENPGDLRKFTCRFCGLKFNLLPDLGRHHQAAHMERNIVKSRPAKKGVRYNAHKLKSGRLGPKFKKGLTAASYRIKNAGNANLKRHIQSTKSLDMGETSMQPQVTKTADIGELTENQCSAVSKTLFSEIQKTKPRPNNLDILSIARSACCKVSLKASLEEKYGTLPEMLYLKAARLCSEHEILVNWHQEGFICPRGCKEFKDQRLLSPLASVSNGFLKPKSVSNVSDPASNELEVDEFHYIINSHHLKLGSLQKAVVLCDDISFGKESIPVICVVDQEILISHLGYGPNEYDNLSRPWESFTYVTKPMLDQSLCLDSESLQLRCACSFSTCCPETCDHVYLFDNDYDDAKDIFGKPMRAKFPYDENGRIILEEGYLVYECSRMCRCNKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAIMRGTFVCEYIGEVLHEQEAHNRRKRYGKEHCSYFFEVDAHINDMSRLLEEQARYVIDATRYGNVSRFINNSCSPNLVSYQVLVESMDCERAHIGLYANRDIALGEELTFNYHYELVPGEGSPCHCGSSNCRGRLY. 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02614 1426 ProSitePatterns Zinc finger C2H2 type domain signature. 745 766 IPR013087 -
Seca12g02614 1426 Pfam Pre-SET motif 1132 1263 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca12g02614 1426 ProSitePatterns Zinc finger C2H2 type domain signature. 813 834 IPR013087 -
Seca12g02614 1426 ProSiteProfiles Post-SET domain profile. 1410 1426 IPR003616 -
Seca12g02614 1426 SMART PostSET_3 1410 1426 IPR003616 -
Seca12g02614 1426 Gene3D Classic Zinc Finger 738 808 - -
Seca12g02614 1426 MobiDBLite consensus disorder prediction 844 872 - -
Seca12g02614 1426 Pfam Zinc finger C2H2-type, 3 repeats 779 904 IPR040689 -
Seca12g02614 1426 SMART set_7 1271 1409 IPR001214 GO:0005515
Seca12g02614 1426 ProSiteProfiles SET domain profile. 1271 1403 IPR001214 GO:0005515
Seca12g02614 1426 Pfam SET domain 1282 1402 IPR001214 GO:0005515
Seca12g02614 1426 SUPERFAMILY SET domain 1121 1416 IPR046341 -
Seca12g02614 1426 SMART preset_2 1129 1255 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca12g02614 1426 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 11 1426 - -
Seca12g02614 1426 SMART c2h2final6 743 766 IPR013087 -
Seca12g02614 1426 SMART c2h2final6 777 800 IPR013087 -
Seca12g02614 1426 SMART c2h2final6 880 903 IPR013087 -
Seca12g02614 1426 SMART c2h2final6 811 834 IPR013087 -
Seca12g02614 1426 Gene3D SET domain 1121 1426 IPR046341 -
Seca12g02614 1426 ProSitePatterns Zinc finger C2H2 type domain signature. 882 903 IPR013087 -
Seca12g02614 1426 ProSiteProfiles Zinc finger C2H2 type domain profile. 777 800 IPR013087 -
Seca12g02614 1426 ProSiteProfiles Zinc finger C2H2 type domain profile. 880 908 IPR013087 -
Seca12g02614 1426 MobiDBLite consensus disorder prediction 839 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02614 Seca-Chr12 43379394 43391273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02614 63 1425 C2H2 Transcription Factor Family AT2G23740 50.072 0.0 1332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca12g02614 Pre-SET 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02614 - - gmx:100808203 2288.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02614 12 43379394 43391273 Seca12g02614 12 43379394 43391273 ECH