Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02598 ATGTTTCCTCACCAGACGAAGTTTGCTTTTATCTTCACAATCTTCATCTTCTGGTCAACAAGCGCACAAAACAACAATAACTGCGATCGTAGTTGTGGAGAACATTCCCTGCAGTATCCTTTTGGATTCTCTGCTGGTTGTGAAGTCAAACTAAGATGCAACAACAGTAAAGTCAAAATTGGCGAGTTACAGGTACAGAACGTAACCTCCGATAGCATATTCATCGATGTTCCAGCGAAATGCAACCGTAGCATCGATTTCATAGACCCACTTTTCGGTCAGAACTTTGCTCCCACACGGAACAACACATTTCTTGTGCAGAATTGTTCGTCCAAGTCCAAGTCCAAGCTCGGTGGCTGCGTTATTCCCCCTTCAAGTTTCGTTCAGATACCTGTGGAGGGTTGTAATAATGGAAGTGATAATATAGATTGCTACACGCAATTGCAGCCTCAGCATCCGTATGAAGATGTCCTCACAAAAGAGGCTTGGAGGAGAATTGGGTGCAAGTACCTTTTCTCTACTATTGTTATTGATAAGAGCAAAGTCAAAGAGCTTTCGCTTCAATTTCAAGTGATTGAATTAGGGTGGTGGCTTCAAGGAACGTGTAATTGCCATGTCAATGCAACCTGTACAGAGGTACATCTTGCAGGAGGAAAACAAGGTTTCAGGTGCCGCTGCCATGAAGGTTTAATCGGAGATGGATTCGTGAATGGCACCGGTTGCCGGAGAGGTGACTCAGTATCAGTTCAATGCAATGCTTCAACACTTGGGTCTAACGGATGCGGAAAAGCAGTCAAAATTGGAGTCCTTGTTGGAGGGATCACAATTGGAGCCTCCATAGTGGCTGCCCTGTTTCTTGTATGTTACTTTGCCAAGCGTCGTTCCACATGGCTGAGAAAACAATTGACAGTAAAGCGCCTGTTAAGAGAAGCTGCAGGAAGTTCTATTGTTCCTTTGTACCCTTACAAAGAAATAGAAAGAGCCACAAATTTTTTCTCTGAGAAACATAGGCTGGGAACTGGTGCTTTTGGCACAGTTTATGCTGGAAACCTTCACAATGATGAGTGGGTTGCTATTAAAAAGATCAAGTACAGAGACACCAATAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTAGTGCGCCTCCTAGGTTGCTGCATAGAAAAGGGAGAGAACATACTTGTTTATGAGTATATGCCCAATGGAACACTATCTCAACATTTGCAAAGAGAGAGGGGTGGAGTACTTTCATGGGTAGTAAGACTCACCATTGCTACTGAAACTGCTAATGCTATAGCATATCTCCATTCTGCAATTGATCCTCCAATTTATCACAGAGACATAAAATCCAGTAACATACTCTTGGACTATAGCTTTCAATCAAAAGTAGCAGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCACATATCTCAACTGCCCCACAAGGGACCCCAGGCTATGTTGATCCCCAATACCACCAGAACTTCCACCTTTCTGATAAAAGTGATGTATACAGTTTTGGGGTGGTTTTGGTAGAGATCATAACGGCCATGAAAGTGGTTGATTTTGCTAGACCTCAGAGTGAGATCAATTTGGCAGCACTTGCGGTTGATAGGATTAGGAGGGGTTGTGTAGATGACATCATAGATCCCTTCCTTGAACCACATAGGGATGCATGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTAGCATTTAGGTGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATTGAAGTAGCTGAGGAGCTAGAACACATAAGACGCAGTGGGTGGGCAACTATGGAGGAAACTATATGCATGGCTTCATCAGTTGGGTCTGAGTGTTCATCATTTCATAATGGAATTGAGAATTTTCCAAGTGGTATTAGTATGGAGAGAGCAGGACCAAGGACTGAAACATTGATTGTTCCAAATAAGACTGATAGTTTTTTTCAATCAATGGAGGAGGTGAAGGACAGCTCCCCAGTGTCTATGCACGATACTTGGTCAAGTGGACCTAGCTCACCTTCAACAAACAGCTTGCTGGGAAATGTAGCTCGGTGA 2106 0.434 MFPHQTKFAFIFTIFIFWSTSAQNNNNCDRSCGEHSLQYPFGFSAGCEVKLRCNNSKVKIGELQVQNVTSDSIFIDVPAKCNRSIDFIDPLFGQNFAPTRNNTFLVQNCSSKSKSKLGGCVIPPSSFVQIPVEGCNNGSDNIDCYTQLQPQHPYEDVLTKEAWRRIGCKYLFSTIVIDKSKVKELSLQFQVIELGWWLQGTCNCHVNATCTEVHLAGGKQGFRCRCHEGLIGDGFVNGTGCRRGDSVSVQCNASTLGSNGCGKAVKIGVLVGGITIGASIVAALFLVCYFAKRRSTWLRKQLTVKRLLREAAGSSIVPLYPYKEIERATNFFSEKHRLGTGAFGTVYAGNLHNDEWVAIKKIKYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGENILVYEYMPNGTLSQHLQRERGGVLSWVVRLTIATETANAIAYLHSAIDPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQSEINLAALAVDRIRRGCVDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEHIRRSGWATMEETICMASSVGSECSSFHNGIENFPSGISMERAGPRTETLIVPNKTDSFFQSMEEVKDSSPVSMHDTWSSGPSSPSTNSLLGNVAR. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02598 701 SMART serkin_6 332 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02598 701 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 688 IPR044652 GO:0004672
Seca12g02598 701 MobiDBLite consensus disorder prediction 668 701 - -
Seca12g02598 701 Gene3D Laminin 200 237 - -
Seca12g02598 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Seca12g02598 701 FunFam Wall-associated receptor kinase-like 14 299 407 - -
Seca12g02598 701 SUPERFAMILY Protein kinase-like (PK-like) 314 605 IPR011009 -
Seca12g02598 701 ProSiteProfiles Protein kinase domain profile. 332 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02598 701 FunFam Wall-associated receptor kinase-like 20 408 617 - -
Seca12g02598 701 Pfam Protein kinase domain 333 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02598 701 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Seca12g02598 701 Gene3D Transferase(Phosphotransferase) domain 1 408 624 - -
Seca12g02598 701 Gene3D Phosphorylase Kinase; domain 1 294 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02598 Seca-Chr12 42589697 42594071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02598 1 701 Receptor kinase-like Gene Family AT2G23450 53.090 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca12g02598 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02598 - - gmx:100793114 1073.15