Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02582 ATGCCGTCGTCGGATTCCGGCGAGAATCGCCGCGCAACCAAGCCCCAGAACCGTGCCGGAGTTGCACCACCGCCGGAGCAAGAGAATCTTCCTTGCCCTCGCTGTGACTCCACCAACACCAAGTTCTGTTACTACAACAACTACAACTACTCCCAGCCTCGCCACTTCTGCAAGTCTTGTCGCCGGTACTGGACTCACGGCGGCACTCTCCGCGACATCCCAGTCGGCGGCGGTAGCCGGAAAAACGCCAAGCGCTCACGCACTCACCATTCTGCCGCTACTTCCTCTTCTTCCGCCGTGACATCGGTGCCGGAGCATCCCTTTCCGGCAATGGCTCCAATCGCCGGCGGTGCTATTCAAGGAGGGCCAATGCAGTTCGGCGGTGGAGTTGACGGCGACGTGAAACAGAACGTGAACGTTTGCGGGAGCTTCACTTCGTTGCTGAGCACCACCCAAGGTTCGGGCTTTCTTGCCCTGGGTGGGTTTGGGCTTGGGCTTGGACATGGGTTTGAGGATATGGGCTTCGGGATTGGTCGAGCGGGTTGGGCCTTGCCTGGAATGGTGGATGGCCCAAACATAAACGGCGCCGTTGCAGCTTCTGGCGTTGGAAACACGTGGCAGTTAGAAGGTGGCGATGGTGGCTTTGTCGGTGGTGACTGCTTCTCTTGGCCGGGATTGGCAATTTCAACACCGGGAAATGGTCTCAAGTGA 711 0.5879 MPSSDSGENRRATKPQNRAGVAPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHSAATSSSSAVTSVPEHPFPAMAPIAGGAIQGGPMQFGGGVDGDVKQNVNVCGSFTSLLSTTQGSGFLALGGFGLGLGHGFEDMGFGIGRAGWALPGMVDGPNINGAVAASGVGNTWQLEGGDGGFVGGDCFSWPGLAISTPGNGLK. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02582 236 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Seca12g02582 236 MobiDBLite consensus disorder prediction 71 107 - -
Seca12g02582 236 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g02582 236 MobiDBLite consensus disorder prediction 89 103 - -
Seca12g02582 236 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Seca12g02582 236 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Seca12g02582 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 102 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02582 Seca-Chr12 41976443 41977153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02582 1 236 C2C2-Dof Transcription Factor Family AT3G50410 49.219 4.71e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g02582 zf-Dof 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02582 - - gmx:778099 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02582 12 41976443 41977153 Seca12g02582 12 41976443 41977153 ECH