Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02565 ATGGCTATGATTGTAGATGCTGTTCTTGGGCATGTGGTTGATGAACTGCTGACTTCAGTTTCGGAAATGAAGGACAAGGCTGTTAAGTTCAAACCCACTCTGGAACAAATGGAGAAGACCCTCAAATCAATAGGACCAGTGGTTAATCAGATTGAAGAACTTAACAAGAGATTGGATCGGTCACCAGAGGAAACTGATAGGCTGATCAATCATATGAGAAGTGGCAAGGAGCTTGTTCTCAAGTGTTCTAAAGTTCAGTGGTGGAACTGCTGCTATAAGGCCAATTACCAAGAGGAACTTCAAGCATTAGATGAAGAAATTATTAGGTTCTTTCAGATAGATATGCAAGGTCAGAATACCAGGAATGGATTGGAGGCCCTAGTGGAGATTAGAGAGTTTCGTGCTGAATTTAGAAATGCTGTTCCGAGAAATGAAAGGATTGAATTGAGGGGCGTGTGCTCGCCTCCTGAACCCCCTGCTTTCACTGTTGGGTTGGATGTTCCTCTGAATGAGTTGAAGGAGAGGTTGCTAAGGGACCAGGTTAGTGTCTCAGTGCTCACGGTCACCGGTTCAGGAGGTTCTGGGAAGTCTACATTAGCCAAAATGTTTTGTAAGGATGATCAAGTCAAAGGTAAATTCAAGGACAATATCTTCTTTGTCACCTTTGCGAAAACGCCCAAATTGAATACCATACTGCAGAAACTGTTTCAACACACTGGTTACCAAGTGCCTGAGTTTCAAAGTGATGAAGATGCGGTTAACCAATTGGAGCATTTGCTAAAAGACATTGGGAAAAAAGGCCCAATACTGTTGGTAGTAGATGATGTTTGGCCAGGATCAGAATCTCTTGTTGACAATTTTGTGTTAGAGATCCCAAACTACAAGATTTTGGTGACATCTAGATTTGCAATTGGAAGATTTGGTCCTCCATACGTCTTGAAACCCCTTGGGGAAGCAGATGCTGTAAATCTATTTCACCACTCAGCATCCCTGAAACAGAGCAGCACTGATATTCCTGATCATGTTGTCAAAGAGATAGTGAGAGGCTGCAGTGGTTCTCCCTTGGCACTTAGAGTGAGTGGCAGATCACTCAGTCACCAGCAGCCATTGGTTTGGCACAACAGGGCGAGGGCATTGTCCAAGGGTCATTCAATTCTTGATTCTAACAATGATGTACTTGTTTGTCTCCAAAAAAGCTTAGATGTATTGAATCCTAAGGCCATAGAGTGTTTTGGGGACCTAGGCTTATTTCCTGAAGACCAGAGGATCCCTGCTGCTGCCCTTGTTGATATGTGGTCAGAACTGCATAATGAAGATGATGCCAGCGCGATGGGGAATATTTATGAATTGGTCAACTTGAGCATGGCTGATATTTTTGTGACAAGGAAAGTTGCAAGTGACACAGTTGAGTACAATTACCACTATGTCACATTGCATGGCCTTCTTCGGGAGCTAGCCATCCATCACACAAGCCAGGATCCAGTGGATAAGAGGAACAGACTAATTATTGACTTAAGTGGAAATAATCTTCCCACATGGTGGACTACAGAGAATGAGTATCACATTGCAGCCCGCATATTATCCATATCAACTGATGAAGCATTCACTTCTGAATGGTGTAACTTGCAGCCAACTGAAGTTGAGGCTCTAGTGTTGAACCTTCGAGAAAAGAAGTGCAGATTACCAGTGTTCATGAAGAAAATGAATAAATTAAAAGTTTTGATAATCACAAATTATGACTTCTATCCTGCTGACATAGAGAATTTCGAGATCCTTGATCATCTATCTGATCTTAAACGAATCAGATTAGAGAAGGTTTCAATTCCCTTACTCAGCAAGACCAGGGTGCAATTGAAGAATCTGCAGAAGTGTTCTTTCTTTATGTGCAATGTGAGTGAAGCATTTAAGAATTGCAATATCCAAGTTTCAGATATGCTGCCAAATTTGGTGGAGTTGAACTTTGACTACTGCAATATGGTGGAATTGCCAGATGTGCTCTCTAATATTGTTTCCTTAAAGAAGCTCAGCATTACAAATTGCCATAAGCTTTCTGCACTTCCTAAAGGAATTGAAAATTTGGTCAATTTGGAATCATTAAGGCTTAGTTCCTGCACTGGTTTAGAAGAGTTGCCAGACTCAATCACAGGCCTTCATAACCTAAAATTTCTCGACATCTCTGACTGCATAAGCCTTAGTAACTTACCTGAGAATATTGGAGAGTTAATTAAATTAGAAAAGCTGAATGTGAGAGGATGCTCAAGATTAAGTGAGTTGCCAACCTCAATCATGGACCTTCTGAGCTTAAGGAATGTGGTATGTGATGAAGAGACAGCTTTATTATGGGAACCTTTCACAACCATCCTTAATGATCTAAGGCTAGAAGTGGCTCAAGCTGATTTCAATTTAGATTTTCTTCATAGTTTGCAGTCGCGGTACTAG 2439 0.4133 MAMIVDAVLGHVVDELLTSVSEMKDKAVKFKPTLEQMEKTLKSIGPVVNQIEELNKRLDRSPEETDRLINHMRSGKELVLKCSKVQWWNCCYKANYQEELQALDEEIIRFFQIDMQGQNTRNGLEALVEIREFRAEFRNAVPRNERIELRGVCSPPEPPAFTVGLDVPLNELKERLLRDQVSVSVLTVTGSGGSGKSTLAKMFCKDDQVKGKFKDNIFFVTFAKTPKLNTILQKLFQHTGYQVPEFQSDEDAVNQLEHLLKDIGKKGPILLVVDDVWPGSESLVDNFVLEIPNYKILVTSRFAIGRFGPPYVLKPLGEADAVNLFHHSASLKQSSTDIPDHVVKEIVRGCSGSPLALRVSGRSLSHQQPLVWHNRARALSKGHSILDSNNDVLVCLQKSLDVLNPKAIECFGDLGLFPEDQRIPAAALVDMWSELHNEDDASAMGNIYELVNLSMADIFVTRKVASDTVEYNYHYVTLHGLLRELAIHHTSQDPVDKRNRLIIDLSGNNLPTWWTTENEYHIAARILSISTDEAFTSEWCNLQPTEVEALVLNLREKKCRLPVFMKKMNKLKVLIITNYDFYPADIENFEILDHLSDLKRIRLEKVSIPLLSKTRVQLKNLQKCSFFMCNVSEAFKNCNIQVSDMLPNLVELNFDYCNMVELPDVLSNIVSLKKLSITNCHKLSALPKGIENLVNLESLRLSSCTGLEELPDSITGLHNLKFLDISDCISLSNLPENIGELIKLEKLNVRGCSRLSELPTSIMDLLSLRNVVCDEETALLWEPFTTILNDLRLEVAQADFNLDFLHSLQSRY. 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02565 812 SUPERFAMILY L domain-like 503 773 - -
Seca12g02565 812 PRINTS Disease resistance protein signature 185 200 - -
Seca12g02565 812 PRINTS Disease resistance protein signature 350 364 - -
Seca12g02565 812 PRINTS Disease resistance protein signature 263 277 - -
Seca12g02565 812 PRINTS Disease resistance protein signature 715 731 - -
Seca12g02565 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 413 IPR027417 -
Seca12g02565 812 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 6 136 IPR008808 -
Seca12g02565 812 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Seca12g02565 812 Gene3D Ribonuclease Inhibitor 497 778 IPR032675 -
Seca12g02565 812 Gene3D - 148 305 IPR027417 -
Seca12g02565 812 Gene3D - 316 393 IPR042197 -
Seca12g02565 812 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 805 IPR039203 GO:0050832
Seca12g02565 812 Gene3D - 395 489 IPR036388 -
Seca12g02565 812 Pfam NB-ARC domain 169 368 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02565 Seca-Chr12 41303747 41308303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02565 595 769 WRKY Transcription Factor Family AT4G12020 31.844 1.59e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02565 - - mtr:25502906 1078.54