Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02562 ATGGCTATGATTGTAGATGCTGTTCTTGGGCATGTGGTTGATGAACTGCTGACTTCAGTTTCGAAAATGAAGGACAAGGCTGTTAAGTTCAAACCCACTCTGGAAAAAATGGAGAAGAACCTCAAATCAATAGGAACACAGGTTAATCAGATTGAAGAACTTAACAAGAGATTGGATCGGTCACCAGAGGAAACTGAGAGACTGATCAATCATATGAGAAGTGGCAAGGAGCTTGTTTTCAAGTGTTCTAAAGTTCAGTGGTGGAACTGCTGCTATAAGGCCAATTACCAAGAGGAACTTCAAGCATTAGATGAAGAAATCATTAGGTTCTTTCAGATAGATATGCAAGCTCAGAATGCCAGGACTGGATTGGAGCTCCTTGCGGAGATTATAGAGTTTCATGCTGAATTTAGAAATGCTGTTCTGAGAAATGAGAGGATTGAATTATGGGGCGTGTGCTCGCCTCCTGAACCCCCTGCTTTTACTGTTGGCTTTAATGTTCCCCTGAATAAGTTGAAGGACAAGTTGCTCCATTACGAGCTTAGTGTCTCAGTGCTCACTCTAACCGGTTTAACAGGTTCCGGGAAGACAACATTAGCCCAAAAGTTTTGTTGGGATGACGAAGTCAAAGGTAAATTCAAGGAGAATATCTTCTTCGTCACCTTTACGAAAACGCCCCAGTTGAATTCCATAGTGTGGAAACTGTATGAACACACTGGTCAGCTGTTGCCTAAGATTCGAACTGATGAAGATGCTGTTAACTATTTGAAACATCTGCTGGATCAGATTGGGAGGAAGGGTTGCCCAATACTGTTGGTGCTGGATGATGTTTGGGAAGGATCGGAACCTCTTGTTAGCCATTTTGTGCTCCCCATCCCAAACTATAAGATTTTGGTGACATCGCGATTCAAAATTCGAACATTTGGTGATCTACATGAATTGCAACCCCTTGGTGAACCACATGCTACAAATCTATTTCGCCATTCAGCATCCCTGCAGAATCAGAGCAGCGCTAATATTCCTGACGATGTTATGAAAGAGCTGCAATGGGTTGCCAATCATTCTCCCTTGGCACTTAGAGTGATTGGCAAGTCATTAAGTGAGCAGAATCCAGCGGGTTGGCGAAACAGAGCGAGGGAATTGTCCAAGGGTCCTTCAAATTTTGAGTCTAGCGATGATGTACTTGCTCATCTCCAAAAAAGCTTAGATGTATTGGATCCTAAGGCCATAGAGTGTTTTGGGGACCTAGGCTTATTTCCTGAAGACCAGAGGATCCCTGCTGCTGCCCTTGTTGATATGTGGTCAGAACTGCATAAAGAAAATGATGGCAGTGCGATAGAGAAAATTTCTAAACTGGTCAAGCTGAACATGGCTGATATTTTTGTGACAAGGAAAGTTGCAAGTGGCACAGATGGCTACAATTACCACTATGTCACGCAGCATGGTCTTCTTCGGGAGCTAGCAATCAGACACACTAGCCAGGATCCAGCGAGCAAGAGGAATAGATTAATCATTGACATAAGTGGAAATAATCTTCCAACATGGTGGACTACAGAGAATAAGTATCACATTGCAGCCCGCAAATTAACTGATGAAGCGTTCACTTCTGAATGGTGCAACTTGCAGCCAACTGAAGTTGAGGCACTAGTGTTGAACCTTCGAGAAAAGAAGTGCACATTACCAATGTTCATCAAGAAAATGAATAAACTAAAAGTTCTGATAATCACAAATTATGACCTTTATCCTGCAGACATAGAGAATTTCGAGCTGCTTGATCATCTATCTAATCTCAAACGAATCAGATTAGAGAACGTTTCAATTCCTCTGCTCAGCAAGACAGGGGTGCATTTGAAGAATCTGCGGAAGTGTTCTTTCTTTATGTGCAATGTGAATGAAGAATTTGAGAATTGCAATATCCAAGTTTCAGTTATGCTGCCAAACTTGGTGGAGATGAACTTTGACAATTGCAATATGGTGGAATTGCCAGTTGTGGTCTCTAATATTGTTTCCTTAAAGAGTCTGAACATTACAAACTGCCATAGGCTTTCTGCACTTCCTGAAGGAATTGGAAAGTTGGTCAATTTGGAATCACTGAGGCTTAGTTCCTGCAAGAGTTTACTAGAGTTGCCTCACTCAATTACAAGCCTTCTTAACCTAAAATTTCTCAACATCTCTGATTGCATAAGCCTTAAAGATTTACCTATGAATATTGGCAAGTTAGTTAAATTAGAAAGCTCAATGTCAGAGGTTGTTCGAGATTAA 2262 0.4151 MAMIVDAVLGHVVDELLTSVSKMKDKAVKFKPTLEKMEKNLKSIGTQVNQIEELNKRLDRSPEETERLINHMRSGKELVFKCSKVQWWNCCYKANYQEELQALDEEIIRFFQIDMQAQNARTGLELLAEIIEFHAEFRNAVLRNERIELWGVCSPPEPPAFTVGFNVPLNKLKDKLLHYELSVSVLTLTGLTGSGKTTLAQKFCWDDEVKGKFKENIFFVTFTKTPQLNSIVWKLYEHTGQLLPKIRTDEDAVNYLKHLLDQIGRKGCPILLVLDDVWEGSEPLVSHFVLPIPNYKILVTSRFKIRTFGDLHELQPLGEPHATNLFRHSASLQNQSSANIPDDVMKELQWVANHSPLALRVIGKSLSEQNPAGWRNRARELSKGPSNFESSDDVLAHLQKSLDVLDPKAIECFGDLGLFPEDQRIPAAALVDMWSELHKENDGSAIEKISKLVKLNMADIFVTRKVASGTDGYNYHYVTQHGLLRELAIRHTSQDPASKRNRLIIDISGNNLPTWWTTENKYHIAARKLTDEAFTSEWCNLQPTEVEALVLNLREKKCTLPMFIKKMNKLKVLIITNYDLYPADIENFELLDHLSNLKRIRLENVSIPLLSKTGVHLKNLRKCSFFMCNVNEEFENCNIQVSVMLPNLVEMNFDNCNMVELPVVVSNIVSLKSLNITNCHRLSALPEGIGKLVNLESLRLSSCKSLLELPHSITSLLNLKFLNISDCISLKDLPMNIGKLVKLESSMSEVVRD. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02562 753 Gene3D - 148 307 IPR027417 -
Seca12g02562 753 SUPERFAMILY L domain-like 481 744 - -
Seca12g02562 753 Pfam NB-ARC domain 169 387 IPR002182 GO:0043531
Seca12g02562 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 415 IPR027417 -
Seca12g02562 753 Gene3D - 397 488 IPR036388 -
Seca12g02562 753 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 744 IPR039203 GO:0050832
Seca12g02562 753 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Seca12g02562 753 PRINTS Disease resistance protein signature 185 200 - -
Seca12g02562 753 PRINTS Disease resistance protein signature 264 278 - -
Seca12g02562 753 PRINTS Disease resistance protein signature 352 366 - -
Seca12g02562 753 PRINTS Disease resistance protein signature 690 706 - -
Seca12g02562 753 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 6 133 IPR008808 -
Seca12g02562 753 Coils Coil 34 54 - -
Seca12g02562 753 Gene3D Ribonuclease Inhibitor 503 749 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02562 Seca-Chr12 41255172 41261585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02562 181 734 WRKY Transcription Factor Family AT5G45050 22.711 1.31e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02562 - - mtr:25502906 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02562 12 41255172 41261585 Seca12g02562 12 41255172 41261585 ECH