Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02540 ATGGATCGGGCGGCGATGACGGTTGGACCGGGCATGGACCTGCCGATCATGCATGATAGCGACCGTTACGATCTGGTCCGAGATATCGGGTCCGGGAATTTCGGCGTGGCGAGGCTGATGCAGGACAAGCAGACCAAGGAGCTCGTTGCCGTCAAGTATATCGAACGGGGTGATAAGATTGATGAAAATGTCAAGAGAGAAATTATTAATCACAGATCTCTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTAGTTTGTTTTTTTATTGCTCTATAAATTTCATTCAGGTCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTTTTTGATCGAATCTGCAACGCTGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGCCACGCAATGCAAGTATGCCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAACACCTCGCTTGAAGATCTGTGATTTTGGGTACTCCAAGTCTTCTGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTACTGAAACAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGTTAGTGGGATTATATCCTTTTGAAGATCCTAATGAACCAAAGGATTTCCGGAAGACAATTCAGAGGATTCTCAGTGTCCAGTATTCCATTCCAGACTTTGTCCAAATATCTCCAGAGTGTCGTCAGCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATGCGGGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTGCCTGCAGAGCTGATGGATGAGAAGATAATGAGTAACCAATTTGAAGAGCCAGACCAACCCATGCAGAGCATTGATACAATCATGCAGATAATTTCCGAAGCTACCATACCAGCTGCTGGGTCTTATTCTTTAGACCAGTTTATGGATAACATCGATATGGATTATGACATTGATGATTTAGAATCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATACTAA 1128 0.4326 MDRAAMTVGPGMDLPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVSLFFYCSINFIQVILTPTHLAIVMEYASGGELFDRICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGLYPFEDPNEPKDFRKTIQRILSVQYSIPDFVQISPECRQLISRIFVFDPAERITMREIWNHEWFLKNLPAELMDEKIMSNQFEEPDQPMQSIDTIMQIISEATIPAAGSYSLDQFMDNIDMDYDIDDLESESELDIDSSGEIVYAIY. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02540 375 SUPERFAMILY Protein kinase-like (PK-like) 15 332 IPR011009 -
Seca12g02540 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Seca12g02540 375 SMART serkin_6 23 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02540 375 CDD STKc_SnRK2 22 291 - -
Seca12g02540 375 Pfam Protein kinase domain 23 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02540 375 PANTHER SERINE/THREONINE KINASE 22 318 - -
Seca12g02540 375 FunFam Serine/threonine-protein kinase SRK2E 112 300 - -
Seca12g02540 375 Gene3D Transferase(Phosphotransferase) domain 1 112 299 - -
Seca12g02540 375 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Seca12g02540 375 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Seca12g02540 375 ProSiteProfiles Protein kinase domain profile. 23 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02540 Seca-Chr12 40726808 40731391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02540 16 302 CBL-interacting serine-threonine protein kinases AT4G24400 40.878 6.16e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca12g02540 Pkinase 3.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02540 K14498 - gmx:100806949 655.981