Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02538 ATGGAACTGAGCTTGGATTTGAGTTTAGCCTTTGTCCCCAGAACCATTTCAGAGCTTTTTGGGGACGTTTGTCAGAACAAAGATGGGTCTCAGAAAATAACCATACTTGAGGACTTTGTCAAAAGGTTGGAAGATGAGATGAGAAAAATCGAGGCTTTCAAACGTGAGCTTCCTCTTTGCATGATCCTTGTAAACGATGCTTTAACTAGATTGAAAGAGGAAATAGATCAGTGTACTAGAATGCAAGATGGACCTGTGGTTGAAGAATTGAAGCCACTATTGAAAACCAATTGTGGAGGAAACGGGTCTTTGACTTTGGGGAATGAAACCAGTGACAAGAAGAACTGGATGAGCTCTGTTCAGCTATGGAGTGCTGAAACCGAATTGAGGAATGGAGAGGATGATCGGTCTGTGCCCCACAACCCAATTAAACCATTGAACCAGACCAACAAGAATGGAGGAGCATTTGTGACGTTCAATGGGAACTTGTGTGTTTCAAAGACAGTGATAAGGGATGACAAGGAGGTTTCACAGGTTCCTAGTATTGGCTTGATGACTCCAGATTTTGAACTGAGTCATAGAAATTCCAGAAGCACGGTTGAGATTAAGGGTCAACCACAACCGCGGCAGAATCCGAGGAAACAAAGGAGATGCTGGTCACCAGAGCTTCATCGGCGATTTGTTGATGCTCTTCAACGATTAGGAGGACCACAAGTGGCCACACCAAAACAGATCAGAGAACTGATGCAGGTGGGGGACTTGACAAATGATGAAGTGAAAAGCCATTTGCAAGTGAGTGTTTAA 804 0.4378 MELSLDLSLAFVPRTISELFGDVCQNKDGSQKITILEDFVKRLEDEMRKIEAFKRELPLCMILVNDALTRLKEEIDQCTRMQDGPVVEELKPLLKTNCGGNGSLTLGNETSDKKNWMSSVQLWSAETELRNGEDDRSVPHNPIKPLNQTNKNGGAFVTFNGNLCVSKTVIRDDKEVSQVPSIGLMTPDFELSHRNSRSTVEIKGQPQPRQNPRKQRRCWSPELHRRFVDALQRLGGPQVATPKQIRELMQVGDLTNDEVKSHLQVSV. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02538 267 SUPERFAMILY Homeodomain-like 212 264 IPR009057 -
Seca12g02538 267 Gene3D - 213 266 - -
Seca12g02538 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 267 IPR017930 -
Seca12g02538 267 MobiDBLite consensus disorder prediction 198 214 - -
Seca12g02538 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 264 IPR044787 GO:0003700|GO:0006355
Seca12g02538 267 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 265 IPR006447 GO:0003677
Seca12g02538 267 MobiDBLite consensus disorder prediction 195 216 - -
Seca12g02538 267 Coils Coil 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02538 Seca-Chr12 40335444 40337873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02538 1 267 G2-like Transcription Factor Family AT4G37180 39.858 1.55e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g02538 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02538 - - lang:109332341 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02538 12 40335444 40337873 Seca12g02538 12 40335444 40337873 ECH
Seca12g02538 12 40335444 40337873 Seca12g02538 12 40335444 40337873 PCT