Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02535 ATGTCATCATCGAATTCTCCATGCGCGGCGTGTAAGATTCTCCGTCGCAAGTGCACACAAGAGTGTATTTTTGCTCCGTACTTTCAGCCAGAGAACCCGCAACGGTTCATATGTGTGCACCGTGTGTTCGGTGCTAGCAACGTGGCAAAGCTTTTGAAGGAGTTGACGGTGTCGCAGCGAGGCGACGCCGTTAGGTCACTGGCCTATGAGGCTGAGGCACGTCTGAGGGACCCTGTCTATGGGTGCGTCGGTTTCATCTTGGTTCTTCAGCAACGACTGAAGCAAATCCAAACTGAGCTTGAGAATGCTAAGAAGGAATTGACTACTTACCTTAGTCCACAAGCTATGGAGTACTTTCTGTCCAGTCCCAGTGCCTTACTCACGAAACAAAATAACTCAAAGGGGAACCCGTTCGTGCTTTTTCCTAACTACATTCCGCCGATTTTGTCAACCCATAAGGGTGGACAGTTGGGGCTTATGGAAGCTCAGCATCTTGCTGCTGTGGCCAGAGAGCAGAAGCGGGTCATGGTCCAGCGGCAACAACAAAAGTTTCTAAGGTTCGAAACAGTTGGTTCAGTTGCGGTTGCAGCTGGTGGTGGTAGTGGGTTTGGTCATCAGATGGGTGTTTCTCTTCCTTCTGCTCCTGTTCATGCTGCTGATCAAATGCAACCTTCTTTGACTGTGGGAACCTTTAAAAATGGTGGCAGTTACCAGATTCACCAGCAACCACAACCGCAGCAAATGGAACAACAACAACAACATGTTCCTCATAACCCTCCTATTGAGGCACAACTGTTACTTTCGCCACAACAATCATGGAAACAACCTAATCGGTCTGAAAGTAAGGATGGTAGGAGTGTTGGTCCTTCTTCTTATTGA 879 0.4846 MSSSNSPCAACKILRRKCTQECIFAPYFQPENPQRFICVHRVFGASNVAKLLKELTVSQRGDAVRSLAYEAEARLRDPVYGCVGFILVLQQRLKQIQTELENAKKELTTYLSPQAMEYFLSSPSALLTKQNNSKGNPFVLFPNYIPPILSTHKGGQLGLMEAQHLAAVAREQKRVMVQRQQQKFLRFETVGSVAVAAGGGSGFGHQMGVSLPSAPVHAADQMQPSLTVGTFKNGGSYQIHQQPQPQQMEQQQQHVPHNPPIEAQLLLSPQQSWKQPNRSESKDGRSVGPSSY. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02535 292 Coils Coil 86 106 - -
Seca12g02535 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 254 - -
Seca12g02535 292 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Seca12g02535 292 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca12g02535 292 MobiDBLite consensus disorder prediction 235 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02535 Seca-Chr12 40129406 40130284 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02535 1 215 AS2 family AT5G66870 47.082 1.76e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g02535 LOB 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02535 - - gmx:102664012 246.514