Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02533 ATGTCATCATCGAATTCTCCATGCGCGGCGTGTAAATTTCTCCGTCGCAAATGCACGCTAGAGTGCGATTTCGCACCGTACTTTCCGCCCGACAACCCGCAACGGTTCATATGCGTGCACCGCGTGTTCGGTGCTAGCAACGTGGCGAAGCTTTTAAAGGAGCTGCCAGTGTCGCAGCGAGAAGAGGCCGTTAAGTCTCTTGCCTATGAGGCTGAGGCACGTTTAAGGGACCCAGTCTACGGATGCGTGGGATTAATATCTGTGCTTCAACAGCGACTGAGGCAAATCCAAACAGATCTTCATAACGCTAAGAAGGAGTTGGGTACTTATCAACTCAATGCGTTTCTCATGCAACCAAATAATTCACAGGGGAACCGATTCATGCTTTTTCCTAACTACCCTAACAACATTCCGCAACCGCCTCCGGTTTTGGCGGGCCATGGGGGCGGACAGTTGGTGATTAGGGATCCGCAGCAACAGGAGCTTCTGGAAGCTCAACAGTTGGCTGCCGCGGCCGCCGCCGGAGAGCAGCAGGTCATGCTCCAACAACAGCAACAAGAGTTTCTAAGGTTCAACAGTGGGTTCGAGCCTGTGGGTTCTGTTGCAACTGGTGGTGGTGGGTTTGATCATCAGATGGGTGTTCCTCTTCCTTCTGCTGCCCCTGTTCATGCTGCTGATCAAATGCCACCTTCTTTGGCTCTAGGAACCTTTGAAAATGTTGGTAATTACCAGATTCACCAGCAACCAGTACAGCAGCAAATAGAACAACAACATGTTCTTCATCACCCTCCTATTGAGGCACAGTTGCTGCTTTCGCCACAGCAATCACAACAACCCAATCAGTCAGAATTAAGTGATGACGGTAGGAGCGATAGTCCTTCTTCTTGTTGA 891 0.5051 MSSSNSPCAACKFLRRKCTLECDFAPYFPPDNPQRFICVHRVFGASNVAKLLKELPVSQREEAVKSLAYEAEARLRDPVYGCVGLISVLQQRLRQIQTDLHNAKKELGTYQLNAFLMQPNNSQGNRFMLFPNYPNNIPQPPPVLAGHGGGQLVIRDPQQQELLEAQQLAAAAAAGEQQVMLQQQQQEFLRFNSGFEPVGSVATGGGGFDHQMGVPLPSAAPVHAADQMPPSLALGTFENVGNYQIHQQPVQQQIEQQHVLHHPPIEAQLLLSPQQSQQPNQSELSDDGRSDSPSSC. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02533 296 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Seca12g02533 296 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca12g02533 296 Coils Coil 86 113 - -
Seca12g02533 296 MobiDBLite consensus disorder prediction 268 296 - -
Seca12g02533 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 244 - -
Seca12g02533 296 MobiDBLite consensus disorder prediction 269 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02533 Seca-Chr12 40028441 40031901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02533 1 205 AS2 family AT5G66870 49.587 6.78e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g02533 LOB 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02533 - - gmx:102664012 244.202