Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02531 ATGCGTTGGTTACCCTCCCTTCCTTTCTCCAATTCTAATTCTTCCTCCCCCGCCGCCGGAGCCGCCGTCGACCACCGCCGGAAGGCTCGGATCTTCGGGAGCTCCTTCCAGAAGCGCACCTGCCACGTTAGCGACCACGATGCCAGGTGCCACTTAGCCGACGAACCTCAGCCGTTGCCCTTGCCGGAGCTGTCCTCCGCCGCCGCGCTTCTTCGCCAGAGAGACTACTGTGACTTCCCTCTGCCCTCGCCCAAGGATGCGGCGGATGCTGCACCCTCCGCCGCCACCGGCTTTCGGATGCGGAGTGTTTTTGCTCGCCAAGAGACGAGAAAGAGTATGGAGCAGGGTGAAAGTAGGTCATCAAGGATGTTGCATCAAGATGTGAGTGGTTGTGAGAACACTAGAGATAATACTAACCACAACTGCGTTAGAATCCCTGGAAGGAATGCTTCAAACTCAAATAGTCCGTTTACCAGTCCCTCAATTAGCCCACAGAGAAGGACAAGTGTTGATTTTGTGCCTTATTATTATGTGACTCCAAGAGGAAATCAATTCTGGTCTGCACCAGAGTTGTCCACCTCTGAAGCAGCGATGCCACCTCCTGCATTCTTTGATTTATCAACATCAGGCACTGAAGCTTCTTCCTCTCCCCGTCAAAGTCCACAGGGAAGAAGTCCCCAGAGACACCTCAGAAGCTCAAGTGGACCTCCATCACCAATACACAACATGTTCTCCCTTGAGATCTCAGCGGCACGTCACGAAAGTAATGCTCCTGTCAGTGTTCACCCCTTACCCCTGCCTCCTGGGGCAGCCTTGCCTTCACCATCTGCTGCGGCTACCTTTTCCCATTCTGTGGCTAAGTCTGAACCATTGCCAATGAAAAACCAATGGCAGAAAGGGAAACTCATCGGGCGGGGCACATTTGGAAGTGTTTATGTTGCCACCAATAGAGAAACTGGAGCATTATGTGCAATGAAGGAAGTAGAAATATTTCCCGATGATCCAAAATCTGCAGAGTGTATGAAGCAGTTAGAGCAGGAAATTAATGTTCTTAGAGATCTGAAACACACAAACATTGTGCAGTATTATGGCAGTGAAATAGCTGATGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGTGCTATAACAGAATCTGTCATTCGGAATTTCACTCGCCACATCCTTTCAGGGTTGGCTTACTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAATTTGCTTGTTGATTCTGCTGGAGTTGTTAAACTTGCTGATTTTGGGATGGCTAAGCATCTAACCGGATGTGAAGCTAATCTTTCTTTAAGGGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAGGCTGTAATACAAAAGGATAACAGCTCAGACCTAGCTTATGCTATTGATATTTGGAGTTTGGGTTGTACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTATGTTTAAGGTTATGAGGGATACCCCACCTATACCTGAAACATTGTCATCTGAGGGTAAAGATTTCCTGAGGTGCTGCTTCAAAAGAAATCCAGCAGAGCGGCCAACTGCTGCAGTGTTACTTGAACATCGATTTTTGAAGAACTCACAACAACCAGATGTTTTATCTTCCACCCAGCTGTATAGTGGAACAAGCTTCATGGATAAATCCCATAGCCCCAGAGGGCAATCTGAAAATAAACCTTATCAGATGTCTATCCCCAGTGCAAAGATTGCAAAGGCGAAAGCAGCCGAAAGGCGCGGATTTTTCATTCCTTCCTTAGATATTCTCCCTGCATACTTAGACCACTGA 1887 0.4722 MRWLPSLPFSNSNSSSPAAGAAVDHRRKARIFGSSFQKRTCHVSDHDARCHLADEPQPLPLPELSSAAALLRQRDYCDFPLPSPKDAADAAPSAATGFRMRSVFARQETRKSMEQGESRSSRMLHQDVSGCENTRDNTNHNCVRIPGRNASNSNSPFTSPSISPQRRTSVDFVPYYYVTPRGNQFWSAPELSTSEAAMPPPAFFDLSTSGTEASSSPRQSPQGRSPQRHLRSSSGPPSPIHNMFSLEISAARHESNAPVSVHPLPLPPGAALPSPSAAATFSHSVAKSEPLPMKNQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSAECMKQLEQEINVLRDLKHTNIVQYYGSEIADDRFYIYLEYVHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGCEANLSLRGSPYWMAPELMQAVIQKDNSSDLAYAIDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPPIPETLSSEGKDFLRCCFKRNPAERPTAAVLLEHRFLKNSQQPDVLSSTQLYSGTSFMDKSHSPRGQSENKPYQMSIPSAKIAKAKAAERRGFFIPSLDILPAYLDH. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02531 628 Gene3D Transferase(Phosphotransferase) domain 1 293 596 - -
Seca12g02531 628 SMART serkin_6 297 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02531 628 ProSitePatterns Protein kinases ATP-binding region signature. 303 326 IPR017441 GO:0005524
Seca12g02531 628 ProSiteProfiles Protein kinase domain profile. 297 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02531 628 MobiDBLite consensus disorder prediction 122 165 - -
Seca12g02531 628 MobiDBLite consensus disorder prediction 197 242 - -
Seca12g02531 628 MobiDBLite consensus disorder prediction 108 165 - -
Seca12g02531 628 MobiDBLite consensus disorder prediction 1 19 - -
Seca12g02531 628 PRINTS Tyrosine kinase catalytic domain signature 527 549 IPR001245 GO:0004672|GO:0006468
Seca12g02531 628 PRINTS Tyrosine kinase catalytic domain signature 413 431 IPR001245 GO:0004672|GO:0006468
Seca12g02531 628 PRINTS Tyrosine kinase catalytic domain signature 376 389 IPR001245 GO:0004672|GO:0006468
Seca12g02531 628 PRINTS Tyrosine kinase catalytic domain signature 485 507 IPR001245 GO:0004672|GO:0006468
Seca12g02531 628 FunFam Mitogen-activated protein kinase kinase kinase 5 294 595 - -
Seca12g02531 628 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g02531 628 SUPERFAMILY Protein kinase-like (PK-like) 284 591 IPR011009 -
Seca12g02531 628 Pfam Protein kinase domain 298 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02531 628 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 72 574 - -
Seca12g02531 628 MobiDBLite consensus disorder prediction 207 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02531 Seca-Chr12 39894534 39900240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02531 112 582 MAP Kinase Kinase Kinase AT5G66850 60.931 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca12g02531 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02531 - - gmx:100790701 882.478