Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02529 ATGGTGAACCCAAAGTGCTTCTTGGACGTTAGTATCGGCGGAGAGATAGAAGGTAGAGTCGTCATCGAGCTATTCAACGACGTCGTTCCCAAAACCGCCGAAAATTTCAGAGCTCTCTGCACCGGCGAAAAAGGCATCGGTCCCAACACTGGTGTTCCCCTCCATTACAAGGGTGCGTGTTTTCATCGGGTGATCAAAGGGTTCATGATCCAAGGCGGTGACATCTCTGCCGGTGACGGCACCGGCGGAGAATCCATTTACGGTTCGAAGTTGGAGGACGAGAACTTTGAGCTGAAGCACGAGAGGAAAGGGATGTTATCCATGGCGAACGCGGGTCCTGACACCAACGGCTCTCAGTTTTTCATCACCACCACTCGGACCCCTCACTTGGACGGGAAGCACGTGGTGTTCGGGAGGGTCGTCAAAGGAATGGGCGTGGTTCGTTCTGTGGAGCATATTGCCACCGGCGAGAATGATCGTCCTGCTCAAGATGTTGTTATTGTTGATTGTGGGGAAATTCCTCAAGGGGAGGATGATGGAGTTGTTAACTTTTTTAAAGATGGTGATAGTTATCCCGATTGGCCAGCTGATCTTGATGTGAAATCGGATGATATTTCTTGGTGGATGAGTGCTGTGGACTCTATCAAAAGTCTTGGGAATGAACAGTACAAGAAGCAAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCCTTGCGCTATTTGGATGAATGTTGGGAGAAGGACGACATTGACCAAGGTCAATTCATTAAGAAGAGCAGTGCTTTAAGGAAGACTAAATCCCAAATCTTTACCAACAGTGCTGCTTGTAAATTGAAATTAGGTGATCTAAAAGGAGCTTTACTGGATTCAGACTTTGCATTGCACGATGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGGCACTAAATGACCTAGATGCTGCTGTTGAAAGCTTCAAGAAAGCATTAGAGTTGGAGCCAAATGATGGAGGGATAAAGAAAGAGTTTGCAACTGCCAGGAAGAAGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAAGATGTTCAAATAG 1095 0.4639 MVNPKCFLDVSIGGEIEGRVVIELFNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGACFHRVIKGFMIQGGDISAGDGTGGESIYGSKLEDENFELKHERKGMLSMANAGPDTNGSQFFITTTRTPHLDGKHVVFGRVVKGMGVVRSVEHIATGENDRPAQDVVIVDCGEIPQGEDDGVVNFFKDGDSYPDWPADLDVKSDDISWWMSAVDSIKSLGNEQYKKQDYKMALRKYRKALRYLDECWEKDDIDQGQFIKKSSALRKTKSQIFTNSAACKLKLGDLKGALLDSDFALHDGDNAKALFRKGQAYMALNDLDAAVESFKKALELEPNDGGIKKEFATARKKVADRRDQEKKAYSKMFK. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02529 364 Gene3D Tetratricopeptide repeat domain 212 364 IPR011990 GO:0005515
Seca12g02529 364 ProSiteProfiles TPR repeat region circular profile. 301 334 - -
Seca12g02529 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Seca12g02529 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Seca12g02529 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Seca12g02529 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Seca12g02529 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Seca12g02529 364 ProSiteProfiles TPR repeat profile. 301 334 IPR019734 GO:0005515
Seca12g02529 364 CDD cyclophilin_ABH_like 4 171 - -
Seca12g02529 364 Gene3D - 1 179 IPR029000 -
Seca12g02529 364 Pfam Tetratricopeptide repeat 301 334 IPR001440 GO:0005515
Seca12g02529 364 FunFam peptidyl-prolyl cis-trans isomerase D 210 364 - -
Seca12g02529 364 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Seca12g02529 364 SMART tpr_5 212 245 IPR019734 GO:0005515
Seca12g02529 364 SMART tpr_5 301 334 IPR019734 GO:0005515
Seca12g02529 364 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Seca12g02529 364 SUPERFAMILY TPR-like 212 361 IPR011990 GO:0005515
Seca12g02529 364 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Seca12g02529 364 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Seca12g02529 364 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Seca12g02529 364 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02529 Seca-Chr12 39830353 39834322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02529 17 170 U-box Gene Family AT5G67530 44.516 2.77e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02529 K05864 - gmx:100803839 659.062