Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02520 ATGGGTCTGTGCACTTCAAAACCACTCTCTTCTCCCAATTCCGGTACCCACTCACCTTCCATTGACATAGACACAGAAACCACTGCAAATGCTAAGCCTCATTCCAATGGCGACAAAAACCCTACCCTTACACCTACCCACCACACCAACAACGGTAAAAAATCACCCTTTTTCCCCTTTTACAGTCCTAGCCCCGCTCACCATTTGTTCTCCGGCAAGTCTCCGGCACCGGGAACTCCAAGGAGGTTCTTCAAGCCGCCGTCGCCGGCGAAGCACATTAGGGCTGTTCTGGCTCGCCGTCACGGCTCCGTGAAGCCAAACGAGGTTCCAATACCTGAAGGGAGCGAAGCTGAGGTGGTTGCTCTTGATAAGAATTTCGGCTTCAACAAGCATTTTGGAAACAAGTACCAGCTTGGGGATGAGGTTGGAAGAGGACACTTTGGTTATACTTGTGCTGCTAAGTTCATCAAGGGTGAACACAAGGGCCAACAGGTCGCTGTTAAGGTCATCCCAAAAGCCAAGATGACCACTGCCATCGCAATTGAGGATGTGAGAAGGGAAGTAAAAATATTGAAAGCTTTGACTGGACACAAGAATCTAATACAATTCTATGATGCATATGAAGACCATGATAACGTCTATATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTTTTGGACAGAATACTTTCAAGAGGTGGGAAATACACAGAAGAAGATGCAAAAGCTGTCATCACACAAATACTGAATGTTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTTACATCCAAAGATGAGAACTCAGAGCTGAAGGCCATAGACTTTGGGTTGTCAGATTTTGTTAGACCAGATGAAAAGCTTAATGATATTGTTGGTAGCGCTTACTATGTGGCTCCTGAAGTTCTGCATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTATTGGTGTGATTGCATATATTTTATTATGTGGCAGCCGTCCATTTTGGGCACGGACTGAGTCTGGGATCTTTCGTGCGGTATTGAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAAAGGATTTTGTTAAGCGGCTACTAAATAAAGATCCAAGAAAAAGAATGACTGCAGCACAGGCATTTGGTGAGTTTCTCATCTATCATTGGAAGGTCTTGGTTTTTCTCATATTCTATTCTGTTCCTTACAGGTGTATACTGCAGGTCATCCATGGATTAAAAATTATAAGGATGTAA 1290 0.4457 MGLCTSKPLSSPNSGTHSPSIDIDTETTANAKPHSNGDKNPTLTPTHHTNNGKKSPFFPFYSPSPAHHLFSGKSPAPGTPRRFFKPPSPAKHIRAVLARRHGSVKPNEVPIPEGSEAEVVALDKNFGFNKHFGNKYQLGDEVGRGHFGYTCAAKFIKGEHKGQQVAVKVIPKAKMTTAIAIEDVRREVKILKALTGHKNLIQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVITQILNVAAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVRPDEKLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQAFGEFLIYHWKVLVFLIFYSVPYRCILQVIHGLKIIRM. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02520 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Seca12g02520 429 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Seca12g02520 429 MobiDBLite consensus disorder prediction 1 58 - -
Seca12g02520 429 FunFam CDPK-related kinase 1 129 224 - -
Seca12g02520 429 SUPERFAMILY Protein kinase-like (PK-like) 133 403 IPR011009 -
Seca12g02520 429 FunFam Calcium-dependent protein kinase SK5 308 401 - -
Seca12g02520 429 FunFam CDPK-related kinase 3 128 300 - -
Seca12g02520 429 CDD STKc_CAMK 135 392 - -
Seca12g02520 429 SMART serkin_6 136 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02520 429 ProSiteProfiles Protein kinase domain profile. 136 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02520 429 MobiDBLite consensus disorder prediction 1 57 - -
Seca12g02520 429 Gene3D Transferase(Phosphotransferase) domain 1 226 402 - -
Seca12g02520 429 Gene3D Phosphorylase Kinase; domain 1 129 225 - -
Seca12g02520 429 Pfam Protein kinase domain 136 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02520 429 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02520 Seca-Chr12 39044273 39047326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02520 1 393 EF-hand Containing Proteins AT3G50530 71.005 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca12g02520 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02520 K00924 - gmx:100803313 634.795