Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02463 ATGGTGATAGATACAAAATATCGGGATCGAATGGTTAAGAAGGAGATGGTGGATCTTCCACAAAATGATCAATTTGTAACGGTAGCATTTCATGGGGAGGATATGCATGAAGACATACCTATAGCCCACCTCTCTAAGAAATCACCTTTAAACATGGCAACATCTGATGAGGCACAGTCACAAAAGTTTGCAAGTTGCAGCTCCATTAAGGTTGCAACAGATGGAACATCCTCTCGTGGTGAGGCTATGTCATCTGCTGTGATTCGAGCAGAGGGGATCCAGTCATGTTTGGGACAAGAATTCCCCAGTTTTGTGAAGTCATTGGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGGTTGCCTGTGGCATTCTGTAAAAGACATTTACCCGATAAGGATGTAACTATCACTTTGGAAGATGAATCTGGAAGAGAATACAAAACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCAGGAGGGTGATGTAGTTGTCTTCCAATTAGTTGAACCTACCAAATTTAAGGTTTATATAATAAGAGCTAATAAGTTAAAGGAACTTGATGGGGCCCTTTTGAATCTTGACAGTTATACGAAACAAAAAGTTGGAGGAAGAAATAACATAGATACTAATGTTATAGCATGTAATAGCCCAAAGAGAAAACATGGTAAATCTGTCCCACCAGATGTCCAAAAGAAAAAGAAGACCAATGTGTCGAGAATGGGGCCTAAGATGAAGCAGTCTATAGAAGAATCTGAAATTGATAGTGAGGAAGCTCTCTCAGATGTATTGGAGGGCTTTAGAATGCTTGAATTCAAAGATTTAAAAGGTTTTGAAAATTTCAACATCATAGTTGATGGAATGCTAATAGATGCTGAACTTTCTCCTGAAATTCGAAACAAGTACTACAAACTCTGCTATAGTCAGCAAGCCTTCCTTCATGAACATCTCATCAAAGGCATGAACTATAAGTTGATTGTTGGAATTATATATGAAATTGTCAACATTGCAGATGCCATAAAAGTAAGTGTGATATCTACCCCACGTGTTGAATTTGCTAATTGGGATAAGACTTTGCTTGCCTTTGAGCATTTGGGAATGAATGTAGAATTTTTAAGAGTCCGATTGCGCCGCCTTGTAAGCCTTGCCTATGAATCAGATGATGCCTCAGGGACCAAAAGATACTTGATGTATAGAACTGAACACAGTCAAGCAGATGATGAAATAAAGAACATGGAAAACAAGCTTGAAGAATTGAAGCAAGCTTGTAATGGTTTTGGTGCTTATCTTGAGAGTCTGAAGTGCAAAGCTGAAAGTTATCAGCTCAAGTATCAGAAAGAGCTTGCTGCTCCTTGGTGA 1398 0.3877 MVIDTKYRDRMVKKEMVDLPQNDQFVTVAFHGEDMHEDIPIAHLSKKSPLNMATSDEAQSQKFASCSSIKVATDGTSSRGEAMSSAVIRAEGIQSCLGQEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDVTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPTKFKVYIIRANKLKELDGALLNLDSYTKQKVGGRNNIDTNVIACNSPKRKHGKSVPPDVQKKKKTNVSRMGPKMKQSIEESEIDSEEALSDVLEGFRMLEFKDLKGFENFNIIVDGMLIDAELSPEIRNKYYKLCYSQQAFLHEHLIKGMNYKLIVGIIYEIVNIADAIKVSVISTPRVEFANWDKTLLAFEHLGMNVEFLRVRLRRLVSLAYESDDASGTKRYLMYRTEHSQADDEIKNMENKLEELKQACNGFGAYLESLKCKAESYQLKYQKELAAPW. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02463 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 198 IPR044837 -
Seca12g02463 465 MobiDBLite consensus disorder prediction 230 261 - -
Seca12g02463 465 Coils Coil 408 435 - -
Seca12g02463 465 ProSiteProfiles B3 DNA-binding domain profile. 104 195 IPR003340 GO:0003677
Seca12g02463 465 SUPERFAMILY DNA-binding pseudobarrel domain 98 195 IPR015300 -
Seca12g02463 465 CDD B3_DNA 102 193 IPR003340 GO:0003677
Seca12g02463 465 Gene3D - 81 197 IPR015300 -
Seca12g02463 465 MobiDBLite consensus disorder prediction 235 249 - -
Seca12g02463 465 SMART B3_2 104 195 IPR003340 GO:0003677
Seca12g02463 465 Pfam B3 DNA binding domain 104 194 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02463 Seca-Chr12 37355955 37360488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02463 86 254 B3 DNA Binding Superfamily AT3G19184 40.909 2.43e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca12g02463 B3 8.5e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02463 12 37355955 37360488 Seca12g02463 12 37355955 37360488 ECH