Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02458 ATGTCGCAACGGTCGACGCCGGCGCCGTTTTTGACGAAGACTTATCAATTGGTGGAGGATCCTGCCACCGACGACGTGATTTCGTGGAGTGAAAGTGGCAACACTTTTGTGGTGTGGAAACATGCTGATTTCGCTAAGGATTTGCTTCCTAAGTACTTTAAGCATAACAACTTCTCAAGCTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATCGTTCCTGACAAATGGGAATTCGCCAACGAGTTTTTCAAGCGAGGACAGAAGGAGCTGTTGGTGGAAATCAAGCGGCGGAAGACGGTGCCTCAATCAACGGCAGCCGGAAAATCCAGCGGCGGCGGAGGAGGAGGAGGAGGAAACTCGGCGTCAAACTCCGGCGGCGAGGACATGGGTTCAACGTCGACGGGATCAGTGGAAGCAACACCACAATGCGCAGATTTATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTAAGCTATGAGCTGGCGAGAGCGAAGAAGCAATGCGACGAGCTCGTGGCTTTTCTGAGGGACACACTCAATGTGGGCCCCGATCAGATCAACCGCATCATTCGGCAAGGAACTTGTGGGTCCAGCCCCGATGCGGTGCGTTTTGAAGATAATGACGAAAACGGGGTAGGTGAATGTGAATGTGAAGGCAGGGAAAGTTTGAAACTGTTTGGGGTTTGGTTGAAGAGTGAAGAAGAAGGCAAAGACAAAATGAAAATTGCCACCGCTAAGGGTAACTGCCGCAAGAGAGGGCGTGAAGACCCTATTGGTAGTGCCAGTGCCAAGGAGCTCAATACTGTTGTTTAG 828 0.5097 MSQRSTPAPFLTKTYQLVEDPATDDVISWSESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEFFKRGQKELLVEIKRRKTVPQSTAAGKSSGGGGGGGGNSASNSGGEDMGSTSTGSVEATPQCADLSGENEKLKKDNEKLSYELARAKKQCDELVAFLRDTLNVGPDQINRIIRQGTCGSSPDAVRFEDNDENGVGECECEGRESLKLFGVWLKSEEEGKDKMKIATAKGNCRKRGREDPIGSASAKELNTVV. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02458 275 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g02458 275 FunFam Heat stress transcription factor B-4 2 100 - -
Seca12g02458 275 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Seca12g02458 275 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g02458 275 Gene3D - 2 101 IPR036388 -
Seca12g02458 275 MobiDBLite consensus disorder prediction 103 152 - -
Seca12g02458 275 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g02458 275 MobiDBLite consensus disorder prediction 253 275 - -
Seca12g02458 275 Gene3D - 140 182 - -
Seca12g02458 275 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g02458 275 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g02458 275 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g02458 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 195 IPR027725 -
Seca12g02458 275 MobiDBLite consensus disorder prediction 104 145 - -
Seca12g02458 275 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02458 Seca-Chr12 37161816 37164063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02458 2 244 HSF AT4G36990 56.452 6.23e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca12g02458 HSF_DNA-bind 3.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02458 K09419 - gmx:100801897 372.089