Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g02456 | ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATCCCGTGGGACGTTGATACTGAGGGCCTGAAAGAATATATGAGCAAATTCGGTGATCTGGAAGATTGTATTGTCATGAGGGAACGATCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTACATCAGTGGAAGATGCCAAGAATGTATTATCCAGTGAACACATGCTTGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCCGAATCTTTGTGGCAAGAATTCCACCATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATACGGTGAGATAACAGATTTATACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACTTTTGCGAATGCAGATTCTGTGGAGAATTTGATGACAGAAACCCATGAGCTTGGAGGTTCTACTGTGGTTGTTGATCGAGCAACGCCTAAGGCAAGATTATTTAAAGCTTGTTCTTTTGCAGCAGAAAAGGAAGATGATTTCAAGCCCATTGGCAGAATGTCACAAGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGACCATCCTGGTTCAATTTATGGAAGGGGAGAACCTTCTCGTGGAATAGGCAGAAAGATTTTTGTTGGTCGTCTTCCCCAAGAGGCAACCACTGAGGATCTTCGGCAGTATTTTGGAAGATTTGGCCGTATATTAGATGTTTATATTCCCAGGGATGCCAAGAGACCGGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCAGATCGTGTCTCGCGAAGGTCTCATGAGATATGTGGACATCAGGTACCGTACTTCAATTTGGATATGCTGTTACTGCCCTGA | 954 | 0.4308 | MEQRKLVVLGIPWDVDTEGLKEYMSKFGDLEDCIVMRERSTGRSRGFGYVTFTSVEDAKNVLSSEHMLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFANADSVENLMTETHELGGSTVVVDRATPKARLFKACSFAAEKEDDFKPIGRMSQGGYGAYNAYISATTRYAALGTPTLYDHPGSIYGRGEPSRGIGRKIFVGRLPQEATTEDLRQYFGRFGRILDVYIPRDAKRPGHRGFGFVTFAEDGVADRVSRRSHEICGHQVPYFNLDMLLLP. | 318 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g02456 | 317 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 2 | 83 | - | - | |
Seca12g02456 | 317 | SMART | rrm1_1 | 93 | 164 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | SMART | rrm1_1 | 238 | 309 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | SMART | rrm1_1 | 5 | 76 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | Gene3D | - | 1 | 84 | IPR012677 | - | |
Seca12g02456 | 317 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 84 | 176 | - | - | |
Seca12g02456 | 317 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 85 | IPR035979 | GO:0003676 | |
Seca12g02456 | 317 | SUPERFAMILY | RNA-binding domain, RBD | 92 | 294 | IPR035979 | GO:0003676 | |
Seca12g02456 | 317 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 168 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 237 | 317 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 69 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 239 | 293 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 151 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | Gene3D | - | 85 | 172 | IPR012677 | - | |
Seca12g02456 | 317 | Gene3D | - | 235 | 308 | IPR012677 | - | |
Seca12g02456 | 317 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 80 | IPR000504 | GO:0003723 | |
Seca12g02456 | 317 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 234 | 305 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g02456 | Seca-Chr12 | 37113813 | 37122163 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g02456 | 6 | 286 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 22.917 | 8.27e-13 | 67.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g02456 | K14411 | - | zju:107424774 | 532.332 |