Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02456 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATCCCGTGGGACGTTGATACTGAGGGCCTGAAAGAATATATGAGCAAATTCGGTGATCTGGAAGATTGTATTGTCATGAGGGAACGATCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTACATCAGTGGAAGATGCCAAGAATGTATTATCCAGTGAACACATGCTTGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCCGAATCTTTGTGGCAAGAATTCCACCATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATACGGTGAGATAACAGATTTATACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACTTTTGCGAATGCAGATTCTGTGGAGAATTTGATGACAGAAACCCATGAGCTTGGAGGTTCTACTGTGGTTGTTGATCGAGCAACGCCTAAGGCAAGATTATTTAAAGCTTGTTCTTTTGCAGCAGAAAAGGAAGATGATTTCAAGCCCATTGGCAGAATGTCACAAGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGACCATCCTGGTTCAATTTATGGAAGGGGAGAACCTTCTCGTGGAATAGGCAGAAAGATTTTTGTTGGTCGTCTTCCCCAAGAGGCAACCACTGAGGATCTTCGGCAGTATTTTGGAAGATTTGGCCGTATATTAGATGTTTATATTCCCAGGGATGCCAAGAGACCGGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCAGATCGTGTCTCGCGAAGGTCTCATGAGATATGTGGACATCAGGTACCGTACTTCAATTTGGATATGCTGTTACTGCCCTGA 954 0.4308 MEQRKLVVLGIPWDVDTEGLKEYMSKFGDLEDCIVMRERSTGRSRGFGYVTFTSVEDAKNVLSSEHMLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFANADSVENLMTETHELGGSTVVVDRATPKARLFKACSFAAEKEDDFKPIGRMSQGGYGAYNAYISATTRYAALGTPTLYDHPGSIYGRGEPSRGIGRKIFVGRLPQEATTEDLRQYFGRFGRILDVYIPRDAKRPGHRGFGFVTFAEDGVADRVSRRSHEICGHQVPYFNLDMLLLP. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02456 317 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Seca12g02456 317 SMART rrm1_1 93 164 IPR000504 GO:0003723
Seca12g02456 317 SMART rrm1_1 238 309 IPR000504 GO:0003723
Seca12g02456 317 SMART rrm1_1 5 76 IPR000504 GO:0003723
Seca12g02456 317 Gene3D - 1 84 IPR012677 -
Seca12g02456 317 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Seca12g02456 317 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Seca12g02456 317 SUPERFAMILY RNA-binding domain, RBD 92 294 IPR035979 GO:0003676
Seca12g02456 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Seca12g02456 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 317 IPR000504 GO:0003723
Seca12g02456 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 69 IPR000504 GO:0003723
Seca12g02456 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 293 IPR000504 GO:0003723
Seca12g02456 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 151 IPR000504 GO:0003723
Seca12g02456 317 Gene3D - 85 172 IPR012677 -
Seca12g02456 317 Gene3D - 235 308 IPR012677 -
Seca12g02456 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Seca12g02456 317 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 234 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02456 Seca-Chr12 37113813 37122163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02456 6 286 Eukaryotic Initiation Factors Gene Family AT2G36660 22.917 8.27e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02456 K14411 - zju:107424774 532.332