Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02438 ATGTTCTCTCTTCCTCCGGAGTGGTTCCGCGGCCGAGGCACCGCTGAAGCAGGGCCCAAGCAATTGAGGTCAAGTGGAGGAGCAGGCGGGGCTAATTCATTAGCAGAGATCCAGGCTTTGTCCAATCAGGATACTGATCCCAAGCTCTCAGTGGAACTCTTGGAAAAGGAAAGAGACTTTTTAAAACTAAGGGATATAGAAATTCTTTGTCAGGCTACAGATTTGGAGAATGAACCTAAAGCATCTCTTGCAAGGTTGAGTGTCGTTCACAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGACAGGCTGTGAAGGTCTGTGGTAGCAAGGAAGCACACAAAGCATATGGAATGGAGGCCACGATAAAATTTGTTCCAGCTCAATGGGAAGAGGAAGTAAAGAAGTTTGTTCCAGCTCAATGGGATCCAGCTTCATTGTTTAGGTGA 459 0.4684 MFSLPPEWFRGRGTAEAGPKQLRSSGGAGGANSLAEIQALSNQDTDPKLSVELLEKERDFLKLRDIEILCQATDLENEPKASLARLSVVHRSLKVAKSGVKKRNRQAVKVCGSKEAHKAYGMEATIKFVPAQWEEEVKKFVPAQWDPASLFR. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02438 152 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g02438 152 SUPERFAMILY EB1 dimerisation domain-like 36 79 IPR036133 GO:0008017
Seca12g02438 152 Gene3D - 28 120 - -
Seca12g02438 152 Pfam EB1-like C-terminal motif 54 79 IPR004953 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02438 Seca-Chr12 36748860 36751082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02438 47 107 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 43.750 6.90e-07 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02438 K10436 - gmx:100790624 83.1889