Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02425 ATGGATGTGGACATAGTGAAAACTTCAGCAAGTGATGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTGTGACCCTTTTTATAACAACACTCTCACCAATGAGTTACAGGGTAGTAGCAGCAGCAACACCACCACCACCACTAGCAGCATTTCAACCATATTTAACATTAACCCAAATGTAACAGTAACACCACCCTCTTTGATTGATTCTCCACCACTATCTTCCAATGTGAATTTCATCACCAACCCAATTCAACAACAAAACCACATGACACTACCCTTTCAACAAAATAACACTTCATTTCCCTACCCTTCATCAGAGAAGAGAAACTCTATGGCTGCAATGAGGGAAATGATTTTCAGAATAGCAGTGATGCAACCGATTCACATTGACCCTGAAGCCATCAAGCCACCAAAGCGAAGGAATGTGAAGATCTCCAAGGATCCTCAGAGTGTAGCAGCGAGACATAGAAGGGAAAGGATAAGTGAGAGGATAAGGATCTTGCAGAGATTGGTTCCTGGTGGGACTAAAATGGACACTGCTTCAATGTTAGATGAGGCTATACATTATGTGAAGTTCTTGAAGAAACAAGTGCAGACTCTGGAACAAGCCGGGGCAAATAGACCCATTGGTGGTTTCTCTTCTGCTTCAGGGATGTTAAACTCTAATAATAATGTGAATTATTCTGCTTTGTTGATGAAGGGTTGTCAACCTTATCAAATGCTTGGTTCTAGTTCTAAACAATTGCTTAGTTGA 771 0.4099 MDVDIVKTSASDDMMAMMMQMEKFPEFCDPFYNNTLTNELQGSSSSNTTTTTSSISTIFNINPNVTVTPPSLIDSPPLSSNVNFITNPIQQQNHMTLPFQQNNTSFPYPSSEKRNSMAAMREMIFRIAVMQPIHIDPEAIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRPIGGFSSASGMLNSNNNVNYSALLMKGCQPYQMLGSSSKQLLS. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02425 256 Gene3D - 149 213 IPR036638 GO:0046983
Seca12g02425 256 Pfam Helix-loop-helix DNA-binding domain 159 199 IPR011598 GO:0046983
Seca12g02425 256 SMART finulus 156 205 IPR011598 GO:0046983
Seca12g02425 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Seca12g02425 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 208 IPR036638 GO:0046983
Seca12g02425 256 CDD bHLH_AtIND_like 151 207 - -
Seca12g02425 256 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 250 IPR045843 GO:0003700|GO:0006355
Seca12g02425 256 FunFam BHLH transcription factor 153 215 - -
Seca12g02425 256 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02425 Seca-Chr12 36258334 36259158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02425 11 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 53.947 7.23e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g02425 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02425 - - gmx:100796649 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02425 12 36258334 36259158 Seca12g02425 12 36258334 36259158 ECH