Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02422 ATGCTAATTAAACGGAAAAGAGATACAAAAGGTTGGATTGACCACTTCTTGGTATTCCACCTCCCTCATCTGAGACCTGCAATGCCATTTAGATCAATTGCACTGTGTTTGGCTTGGACCTTCAACACTGCTGAGGAAGCTGCAAGAGCTTATGATTTTGAAGCTAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGGGGCTGCTGGTTCTTCCTCCAAACGTGTCAACTGTCAAGGCCAATCCATATATGGATAG 267 0.4569 MLIKRKRDTKGWIDHFLVFHLPHLRPAMPFRSIALCLAWTFNTAEEAARAYDFEARRIRGKKAKVNFPDGAAGSSSKRVNCQGQSIYG. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02422 88 ProSiteProfiles AP2/ERF domain profile. 1 68 IPR001471 GO:0003700|GO:0006355
Seca12g02422 88 MobiDBLite consensus disorder prediction 73 88 - -
Seca12g02422 88 Gene3D AP2/ERF domain 30 69 IPR036955 GO:0003700|GO:0006355
Seca12g02422 88 SUPERFAMILY DNA-binding domain 40 69 IPR016177 GO:0003677
Seca12g02422 88 MobiDBLite consensus disorder prediction 69 88 - -
Seca12g02422 88 PANTHER DNA-BINDING DOMAIN 40 73 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02422 Seca-Chr12 36177254 36177651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02422 29 73 AP2-EREBP Transcription Factor Family AT1G72360 62.222 1.52e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02422 K09286 - egr:104419520 68.5514