Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02421 ATGGATTGGGTACGAGGAGACTCAATTGGTAGAGGAAGCTTCGCTACTGTAAATTTGGCTAAACCAACCACAAGCAATTCCACTTGGTTTTCTTCTCCGACCGTTGTTAAATCCTCTGAGGCTTCAACCTCGTTTTCGCTCAAGAACGAGAAACATGTCCTTGATTGCTTAGGTTCATGCCGGAGAATCATTCGGTGTTTCGGCGATGACTACACCTTCGAGAATGGTGAAGAGTATTACAATTTATTCCTTGAATACGCCGCCGGCGGGAGTCTCGCCGATCAGCTCAAGTTCCACGGTGGCCGGATTCCGGAGCAACGAGTTCGGAGTTACACGAGGTCTGTTATCGAGGGGCTTATGCATATTCACAAGAACGGGTTTGTCCACTGTGATGTGAAGCTTCAGAACATACTGGTGTTTGGTGATGGAGAGATCAAAATCGCTGATTTTGGTCTTGCGAAGGAAACAGGGGTGAAACAGAGCAAGTTTGAATGCAGGGGAACTCCCCTGTTTATGTCGCCGGAATCGGTTAACGACGGCGAGTATGAGTCGCCGGCGGATATTTGGGCTCTTGGGTGTGCGGTGGTGGAGATGGTGACTGGAAAACCCGCGTGGAATGTGGAGAAAGGTTTGAGTATTTGGTCGTTGTTGCTTCGAATTGGAGCGGGAGAAGAATTACCAGAGATACCAGAGGAATTGTCGAAGGAAGGAAGGGATTTTCTTGAGAAGTGTTTCGTGAAGGATCCAAGAAAGAGATGGACGGCTGAGATGCTTTTGAAACACCCTTTTGTGGATGGTGATGACATTGTTTCATTGAAGAATGTGAAGAATGAGTCACCAAGAAGCCACTTTGATTTCCCTGATTGGGTTTCCAGTGTGGCGAGTTCACCGGAAGAGCCTTGCCGGTGGGATTTTGGTTCGTCGTGTAGTTTCTGTTCGCCGGTGGATAGGCTCCGGCAGCTCGTGACAGTTCAGATGCCGGAGAGTTGGTCGGAATCAGATAGTTGGACTAGTATTAGGTGA 1023 0.4848 MDWVRGDSIGRGSFATVNLAKPTTSNSTWFSSPTVVKSSEASTSFSLKNEKHVLDCLGSCRRIIRCFGDDYTFENGEEYYNLFLEYAAGGSLADQLKFHGGRIPEQRVRSYTRSVIEGLMHIHKNGFVHCDVKLQNILVFGDGEIKIADFGLAKETGVKQSKFECRGTPLFMSPESVNDGEYESPADIWALGCAVVEMVTGKPAWNVEKGLSIWSLLLRIGAGEELPEIPEELSKEGRDFLEKCFVKDPRKRWTAEMLLKHPFVDGDDIVSLKNVKNESPRSHFDFPDWVSSVASSPEEPCRWDFGSSCSFCSPVDRLRQLVTVQMPESWSESDSWTSIR. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02421 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Seca12g02421 340 SUPERFAMILY Protein kinase-like (PK-like) 3 303 IPR011009 -
Seca12g02421 340 Pfam Protein kinase domain 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02421 340 CDD STKc_MAPKKK 2 264 - -
Seca12g02421 340 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Seca12g02421 340 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02421 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 293 - -
Seca12g02421 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 297 - -
Seca12g02421 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Seca12g02421 340 Gene3D Transferase(Phosphotransferase) domain 1 94 288 - -
Seca12g02421 340 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02421 Seca-Chr12 36119102 36120124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02421 1 340 MAP Kinase Kinase Kinase AT4G36950 54.810 4.82e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca12g02421 Pkinase 6.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02421 - - gmx:100798607 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02421 12 36119102 36120124 Seca12g02421 12 36119102 36120124 ECH
Seca12g02421 12 36119102 36120124 Seca12g02421 12 36119102 36120124 PCT