Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02409 ATGGCTGCAGTTCTTCGAGTCATCTCCACCACTACAATCCAAGCACCGAGTCACAATAACGGTGACTCAACTCGGAAAATCGATTTAACCCCGTGGGATCTCCAATTCCTCCCACTTGATCCCATCCAAAAAGGCCTTCTTTTTCACCTTCCTCCAGACACATCAAACCATATTATCCATCACTTGAAGCATTCCCTTTCCTCCACTCTTTCCTTCTTCCCACCTCTCACAGGTCGTCTCATTATCACTGAACACGAAGATAACACTGCCTCCTCTTTCATCGCTTGCAACAACAAAGGTGCACTGTTTGTCCATGCCACAGCAGAGAATACCACTGTTGCGGACATCCTTCAACCTAACTATGTCCCTCCCATTGTCCACTCCTTCTTCCCACTTAACGGAGTTAGAAACTATGAAGGCACATCACAGCCATTGCTTGCAGTGCAGGTGACGGAGTTAGTTGACGGTATTTTCATTGGCTGCACAATGAACCACGTGGTTGTTGACGGCAAGTCATTTTGGCTTTTCTTCAATTCTTGGGCTGAAATCTCACGGGGTTGCCTTAAAGTATCCAAAATCACTGCATTTGATCGCTGGTTTATGCATGAAATTGACCGTCCGATACGATTTCCTTTCACAATGGAAGCACAAAAGCAACACTTTGAAAGCCTCAACCCACCACCTGAGAGGATCTTCCATTTCACAAAGGAGAAAATAGTGCAACTCAAATCGAAAGCAAATGCAGAAGCCAACACTGACAAAATATCTTCTCTACAAGCACTTCTAACTCACCTTTGGCGCTCTGTGATCCGTTGCAAACGACTTGACCCACAAGAAGAGGTTCATTATATGTTGGTGATTGGTGTTAGACCCAGGATTGTTCCTCCATTACCGGAGGATTATTTTGGAAATGTGGCACTGGTTGGTGGTGTCACAATGAAAGCAGGGGAGCTACTGGAGGGTGGGCTTGGGAAGGGTGCTTGGGAGATGAACAAGATGATTGCTTCGAACTCTGATGAGAAGGTAAGGAAACATTATGAGTCTTGGGTGAGAAATCCAAGGCTGCTTATGTTAGGAAACCTGACCGGTGGTAATTCCTTGGCCACCAGTAGTTCCCCAAGGTTTAATGTTTATGGTAATGATTTTGGTTGGGGAAAGCCTGTGGCGGTGCGAAGTGGCGGTGCAAGTAAAAGAAATGGAAAGATTACTGTATTTGCTGGGGCAGAGGAAGGTAGTATTGACATTGAAGTGTGCCTTCCTTATGAGATTTTGGACGCATTGGGAAATGATAATGAGTTCATGGATGCCATTTCCAACTAA 1320 0.453 MAAVLRVISTTTIQAPSHNNGDSTRKIDLTPWDLQFLPLDPIQKGLLFHLPPDTSNHIIHHLKHSLSSTLSFFPPLTGRLIITEHEDNTASSFIACNNKGALFVHATAENTTVADILQPNYVPPIVHSFFPLNGVRNYEGTSQPLLAVQVTELVDGIFIGCTMNHVVVDGKSFWLFFNSWAEISRGCLKVSKITAFDRWFMHEIDRPIRFPFTMEAQKQHFESLNPPPERIFHFTKEKIVQLKSKANAEANTDKISSLQALLTHLWRSVIRCKRLDPQEEVHYMLVIGVRPRIVPPLPEDYFGNVALVGGVTMKAGELLEGGLGKGAWEMNKMIASNSDEKVRKHYESWVRNPRLLMLGNLTGGNSLATSSSPRFNVYGNDFGWGKPVAVRSGGASKRNGKITVFAGAEEGSIDIEVCLPYEILDALGNDNEFMDAISN. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02409 439 Gene3D - 213 429 IPR023213 -
Seca12g02409 439 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 434 - -
Seca12g02409 439 Pfam Transferase family 7 434 - -
Seca12g02409 439 Gene3D - 5 210 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02409 Seca-Chr12 35926367 35927686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02409 46 422 Monolignol Biosynthesis Gene Families AT5G48930 27.930 6.92e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02409 - - gmx:100500257 593.578