Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02407 ATGAGTGCTGTTAGCGTCATCTCCACCAGTTCAATCCAGGCACCGAGTCACAATAACGATTACTCAACTAGAAATATCCATTTAACCCCATGGGATCTCCAACTCCTGCCAGTTGAACCAATCCAAAAGGGACTTCTTTTTCACAAACCTGAAGACACATCAAACCATATTATCCATCACTTGAAACGATCCCTTTCCTCAACTCTTGCCTTCTTCCCACCTCTCACAGGTCGTCTAATTATCACTAAACACGAAGATAACACTGCCTCCTCTTTCATCGCTTGCAACAACAAAGGTGCACTGTTTGTCCATGCAACAACAGCCAACACTAGTGTTGCTGACATCCTTCAACCCACACACGTTCCTCCCATTGTCCACTCCTTCTTTCCACTCAACGGTGTTAAAAACTATGAGGGCACAACACAGCCATTACTTGCAGTGCAAGTGACGGAGTTAGTTGACGGCATCTTCATTGGCTGCACAATGAACCACTTGGTTGGTGACGGCAAGTCGTTTTGGCTTTTTATCAAATCTTGGGCTGAAATCTCACGGGGTTACCAAATATCCAAACTCCCTACATTTGACCGTTGGTTTCTGGATGGCATTGACTGTCCCATACGATTTCCTTTCACACAAAAGGAAAACTCTAAAAGCGACGTCGTACCACCAGAGAGGGTCTTCCATTTCACAAAGAAGAAAATTGCACAACTCAAATCGAAAGCAAACGCAGAGGCCAACACGGACAAAATATCTTCTCTGCAAGCGCTTTTAACTCACCTTTGGCGCTCTATGATCCGTTGCAAACAACTTGACCCTCAAGAAGAAGTCCACTATTTCTTGCTGATAGGCGTTAGACCCAGGTTGGTTCCTCCATTGCCAGAGGATTATTTTGGAAATGCGGCGCTGCTTAGTGGTGTCACAATGAAAGCAGGGGAACTATTGGAGGGTGGGCTTGGGAAGGGTGCTTGGGAGATGAACAAAATGATTTCTTTGCACTCTGATGAGATGGTAAAGAAACAGTATGAGTTTTGGGTGAAAAAACCAAAGCTGATTACACTGGGTAGCGTGAGTAGTAGTAATTCCTTTGTAACTAGTAGTTCCCCAAGGTTCGATGTTTACGGTAATGATTTTGGTTGGGGAAAGCCTTTAGCTGTTCGAAGTGGTGGAGCACAAAAAAGAAATGGAAAGATTACTGTGTTTACCGGGGCGGAAGAAGGTAGTGTGGACATTGAAGTGTGCCTTCCTTATGAGATCTTGGTGGACCTTGGAAATGACCCTGAGTTCATGCATGCAATTTCCAACTAA 1305 0.446 MSAVSVISTSSIQAPSHNNDYSTRNIHLTPWDLQLLPVEPIQKGLLFHKPEDTSNHIIHHLKRSLSSTLAFFPPLTGRLIITKHEDNTASSFIACNNKGALFVHATTANTSVADILQPTHVPPIVHSFFPLNGVKNYEGTTQPLLAVQVTELVDGIFIGCTMNHLVGDGKSFWLFIKSWAEISRGYQISKLPTFDRWFLDGIDCPIRFPFTQKENSKSDVVPPERVFHFTKKKIAQLKSKANAEANTDKISSLQALLTHLWRSMIRCKQLDPQEEVHYFLLIGVRPRLVPPLPEDYFGNAALLSGVTMKAGELLEGGLGKGAWEMNKMISLHSDEMVKKQYEFWVKKPKLITLGSVSSSNSFVTSSSPRFDVYGNDFGWGKPLAVRSGGAQKRNGKITVFTGAEEGSVDIEVCLPYEILVDLGNDPEFMHAISN. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02407 434 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 429 - -
Seca12g02407 434 Pfam Transferase family 4 429 - -
Seca12g02407 434 Gene3D - 209 423 IPR023213 -
Seca12g02407 434 Gene3D - 2 203 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02407 Seca-Chr12 35844289 35845593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02407 45 417 Monolignol Biosynthesis Gene Families AT5G48930 27.569 5.99e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02407 - - gmx:100500257 560.066