Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02406 ATGGCAAACATCCGAGTCATCTCAAAGAGTACTATCCAAGCACCGAGTCACCTTAACAGTACTGACTCTACTGAATATCAGAAAATTCATTTAACTCCATGGGATCTCGAATCTCTCAAACTTGAGATGAACCAAAAAGGGCTTCTTTTCAATAAGGCACAAGACAACACACCAATACAAATCCAGCACCTGAAAAACTCTCTTTCCTCCACTCTTGCCTTCTTTCCACCCGTCGTAGGCCGTCTCATCACTACAGAACACCAAGACAACACAACATCCTCTTTCATCGCTTGTAACAACAAAGGTGCACTGTTTGTTCACGCTACAGCAGAGACAACCACTGTTGCTGACATCCTTAAACTGCTAGCGGTGCAAGTGACGGAGCTGGTTGACGGAATCTTCATTGGCCTCACAATCAACCACGTGGTAGCAGACGACAAGTCGTTTTGGCTTTTCGTCAATTCCTGGGATGAAATCTCACGCGGTTTAACCAAAATATCGAAACTCCCTGTACTTGAACGCTGGTTTCTTGATGGCGTTCACCCTCCCTTACGCTTTCCTTTCACAAAGGGGGAAGAGAAGCAGTACTCTGAAAACTCCAACCCACAACCGCCACAGCCGGTTAGGATTTTGCATTTCACAAAGGAGAAAATTGCGCGACTAAAATCAAAAGCTAATGAAGATGCTGGATCCAACAAAATATCTTCACTCCAAGCACTTTTAACTCACCTTTGGCGCACTGTGATCCGTTTCCAACGAGTTGACCCACAAAAAGAGATATGTTATTGCTTAGCAATTGACGTTAGACAGAGAGTGGCTCCGCCGTTGCTGGAGAATTATTTTGGGTACTTGATAAAATAA 861 0.4425 MANIRVISKSTIQAPSHLNSTDSTEYQKIHLTPWDLESLKLEMNQKGLLFNKAQDNTPIQIQHLKNSLSSTLAFFPPVVGRLITTEHQDNTTSSFIACNNKGALFVHATAETTTVADILKLLAVQVTELVDGIFIGLTINHVVADDKSFWLFVNSWDEISRGLTKISKLPVLERWFLDGVHPPLRFPFTKGEEKQYSENSNPQPPQPVRILHFTKEKIARLKSKANEDAGSNKISSLQALLTHLWRTVIRFQRVDPQKEICYCLAIDVRQRVAPPLLENYFGYLIK. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02406 286 Gene3D - 118 184 IPR023213 -
Seca12g02406 286 Gene3D - 4 117 IPR023213 -
Seca12g02406 286 Gene3D - 188 285 IPR023213 -
Seca12g02406 286 Pfam Transferase family 120 284 - -
Seca12g02406 286 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02406 Seca-Chr12 35816766 35817703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02406 62 285 Monolignol Biosynthesis Gene Families AT5G48930 28.030 3.93e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02406 - - gmx:100797643 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02406 12 35816766 35817703 Seca12g02406 12 35816766 35817703 ECH