Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02402 ATGTGGGATCTCAATGACTCACCTGATCAGAGAAAGGATGAGGAATCTGAAGGGTGTTCTTCCCTCAAGACTTCCATAGATGGGGATGATGATAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCAAGTTCTTCAGCAGTGGTCATAGAGGACGGATCAGAAGCAGAAGAAGAACAAGAAGAAGAAGGTGAGAGGGAAGGTAACAGAACGATGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCTGTAACAACCCAAAATGAAGATAGTGACCACCCACCTGTGACAAGGCAATTTTTCCCTTTGGAAGAGCCTGATATGGCAGTTGCATCCAGTGGTGGAGGAACCTCTGCCTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGTCAATCAGAAGCACTTGGAACTGGAAAATCAGTGGAAGTTTCACAACCCATGAAGAAGAGTAGAAGAGGACCAAGGTCAAGAAGCTCACAATATAGGGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGCGGAAAACAGGTGTATCTGGGTAAGTATAATGATAAGAATGATTGTGTATGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCTGCTATTAAGTTCCGAGGTGTTGAGGCAGACATAAACTTCAGCATAGAGGATTATGAAGAGGATTTGAAGCAGATGAGCAATCTGACAAAGGAAGAGTTTGTTCATGTACTTCGCCGACAAAGCACTGGTTTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGGAGATGGGAAGCTAGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGATACTGAGATTGAAGCTGCAAGGGCTTATGACAAGGCAGCAATAAAATGCAACGGTAAAGAGGCGGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGCAGAATCTACAGGTAACGCTGCAGATCACAATCTGGATCTAAGTTTGGGGAATTCAAGTTCAAAGCCTGGGAATAGTCAAGCGTTTGGGAATCACACCACAAATGCTGCAAATCATGAGCAACACTTACAATCTGAATCTAATTGGCGGAATGGGGGAAATAAGCCTAAGCTGGTGAATATATTGCCAAAACCGTGTCATAGAAGCAACAATGAAGCGCAAAAAAAGGATGTGCATGGTGAGAGTGAAGCATTGCGGATGCTAAGTCAAACTCACCTTCATTCTAATGAAATGCAAAGATATGGTCCCTATAGGTCTTCTGGGGAGTCTCCAATGCTTCACAATTTTGCACATGTTCACCCACCAAATTTTCATTTTCCAAGCAGCAGCTATGGAGGCCGTGTAGGAAGTGATCTTTCACTATCAACAAGTGATCAACAACAGTGGCAATCCGGGCCTTCACATTATTTAGCAAGTGCTGCAGCATCATCAGGATTCCCTCCTCAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 1560 0.4365 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDDKGKRVGSVSNSSSSAVVIEDGSEAEEEQEEEGEREGNRTMKKRSSKIFGFSVTTQNEDSDHPPVTRQFFPLEEPDMAVASSGGGTSAFPRAHWVGVKFCQSEALGTGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGKYNDKNDCVCGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSAESTGNAADHNLDLSLGNSSSKPGNSQAFGNHTTNAANHEQHLQSESNWRNGGNKPKLVNILPKPCHRSNNEAQKKDVHGESEALRMLSQTHLHSNEMQRYGPYRSSGESPMLHNFAHVHPPNFHFPSSSYGGRVGSDLSLSTSDQQQWQSGPSHYLASAAASSGFPPQIRPSSQGWLQKNGFHTLMRPS. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02402 519 MobiDBLite consensus disorder prediction 140 160 - -
Seca12g02402 519 FunFam AP2-like ethylene-responsive transcription factor 261 321 - -
Seca12g02402 519 MobiDBLite consensus disorder prediction 329 408 - -
Seca12g02402 519 MobiDBLite consensus disorder prediction 329 383 - -
Seca12g02402 519 MobiDBLite consensus disorder prediction 1 76 - -
Seca12g02402 519 SUPERFAMILY DNA-binding domain 159 227 IPR016177 GO:0003677
Seca12g02402 519 ProSiteProfiles AP2/ERF domain profile. 262 319 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 Gene3D AP2/ERF domain 261 320 IPR036955 GO:0003700|GO:0006355
Seca12g02402 519 Gene3D AP2/ERF domain 159 228 IPR036955 GO:0003700|GO:0006355
Seca12g02402 519 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 412 - -
Seca12g02402 519 Pfam AP2 domain 261 310 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 FunFam AP2-like ethylene-responsive transcription factor 159 228 - -
Seca12g02402 519 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g02402 519 MobiDBLite consensus disorder prediction 466 505 - -
Seca12g02402 519 ProSiteProfiles AP2/ERF domain profile. 160 226 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 MobiDBLite consensus disorder prediction 466 487 - -
Seca12g02402 519 CDD AP2 261 321 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 PRINTS Ethylene responsive element binding protein signature 301 321 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 SUPERFAMILY DNA-binding domain 261 321 IPR016177 GO:0003677
Seca12g02402 519 SMART rav1_2 262 325 IPR001471 GO:0003700|GO:0006355
Seca12g02402 519 SMART rav1_2 160 232 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02402 Seca-Chr12 35569315 35574978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02402 1 356 AP2-EREBP Transcription Factor Family AT4G36920 66.488 3.66e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g02402 AP2 3.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02402 K09284 - gmx:100792442 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02402 12 35569315 35574978 Seca12g02402 12 35569315 35574978 ECH