Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02398 ATGGATGGTGAAGGAGGAAGAGGAAGAGAAACAGAGAAGAGACGAACAGAGGCTGATACAACAACGAGGTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTTGCTGAGATTCGAGAACCCAACAAGCGTTCTCGGATTTGGCTCGGTTCTTATTCCACTCCCGTTGCGGCGGCGCGTGCTTATGATACCGCCGTTTTCTATCTCCGGGGATCATCTGCTCGCCTAAACTTCCCAGAGCTTCTCAACGGAGAAGGTGGCGCCACCGCCTCTGCCGCTTCGGATATGTCCGCGGCTTTCGTAAGGAAGAAAGCCGCGGAGGTCGGTGCCAGAGTCGACGCCCTCCACCGCCAGCATCCACGTGCTTCCGCCGCCGGGGAATTCGCGGAACGGGTCGACCTAAATAAGATACCCGAACCCGATAATTCGGATTGTGACTGGGACAGGGACTAG 456 0.5614 MDGEGGRGRETEKRRTEADTTTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGSSARLNFPELLNGEGGATASAASDMSAAFVRKKAAEVGARVDALHRQHPRASAAGEFAERVDLNKIPEPDNSDCDWDRD. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02398 151 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g02398 151 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Seca12g02398 151 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Seca12g02398 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 145 - -
Seca12g02398 151 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Seca12g02398 151 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Seca12g02398 151 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Seca12g02398 151 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Seca12g02398 151 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Seca12g02398 151 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Seca12g02398 151 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Seca12g02398 151 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02398 Seca-Chr12 34958873 34959328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02398 24 149 AP2-EREBP Transcription Factor Family AT2G23340 63.194 5.25e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca12g02398 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02398 K09286 - gmx:100784157 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02398 12 34958873 34959328 Seca12g02398 12 34958873 34959328 ECH
Seca12g02398 12 34958873 34959328 Seca12g02398 12 34958873 34959328 PCT