Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02391 ATGCTGAAAAACACAGACACGGTGAATCACCGTGCATATTCCCCTCTCCCACCCCCAAACACACGTCAACATTACACAAACCAAACGATGCGTCGTTTGAAAACATTCTTCCCTCTCTTCTTTTACTTCTTCACACTCGCTTCCTCCGCCAACGACCTGACACTTCCTTCAGACGCCGTGTCCTTGTTGTCGTTCAAGCGGGAAGCAGACGCAGACGACAAGCTGCTCTACGCACTTAACGAGCGCTACGACTACTGCGAGTGGCAGGGAGTGAAATGTGCACAAGGCAGAGTCGTACGCTTCGTCGTTCAAGGCATAGGCCTCCGCGGCGTGTTCCCTCCCAATACCTTAACTCGCCTCGACCAGCTCCGAGTCATGAGTCTCCGCAACAACTCGCTATTCGGACCCATTCCGGATCTTTCCCCTCTCATTAACCTCAAATCGCTCTTCCTCGACCGAAACCACTTCACCGGTTCTTTCCCTCCTTCTATTCTCTTCCTTCACCGTCTCCTCACTCTCTCACTAGCTCATAACAACCTCACCGGTTCACTACCGGTCCAACTCAACCTCCTCGACCGGCTCATTTCCCTCCGGCTCGACTCCAACTTCTTCAACGGAACCCTTCCCCCTTTAAACCAGACCGGTCTCAGAGTCCTTAATGTCTCTGCCAACAACCTCACCGGTCCGGTTCCTGTGACCCCAACCCTTGCTCGTTTAAAACCGACGTCGTTTTCAGGAAACCCGGGTCTCTGTGGTGAGATTATACACAAGCAGTGCGACGACCCTCGTTCACGATTCTTCGGTTCCTCAAACGCCACCGTTTCAGCACCGCTGAGCCAGAGTGAGGAATCGCAGGGCAGTATCGTGGTGGTTACTTCCCCGGCGAAGAAGAAGCATAAGAGAATCAGCTTGGTCCTCGGGTTCACTGCCGGGGTTGCGATTCTCGCTGCTTTTGCTCTTGTTGCGGTTGCTTTGGTTAGAAGTAGAAAACAGAGCGGTGCAGGAAAATCGGAGATGTTAACGGAAACCTCTTCGCCGGCGGCGGGGATGGAGGTGGTGCAGAATGAGGTTGGAACAGCGGAGGCGAAGGTAAGGAAGATGGAGGAGGCGCATAAGAGTGGGAAGTTGGTGTTCTGCTGCGGGGAGGTGCAGCAGTATACGCTGGACCAGTTGATGAGGGCTTCGGCGGAGCTTCTGGGTAGGGGAAGTGTGGGGACCACTTACAAGGCAGTTCTGGATTCGCAGCTGATTGTGACGGTGAAGAGGATGGATGCCGGAAAAACTGCGGTGACCAGCGGGGAAGTTTTCGAAAGGCACATGGAGATGGTGGGAAGGCTTCGCCACCCTAATTTGGTTCCGTTAAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTCGTCATCTATGATTATCAACCCAATGGGAGCCTCTTCAACCTCGTTCATGGTAGTTCAAAATCAGCGAGGGCCAAGCCCCTGCATTGGACATCATGCTTAAAAATAGCCGAAGATGTAGCACATGGACTTGCTTATATACACCAAGCTTCGTCTTTAATTCATGGCAACCTTAAATCCTCTAATGTCCTTCTTGGAGTGGACTTTGAAGCTGTAATTACAGACTATAGTTTGGCCTTCCTTGCAGAGTCTTCAATCTGTGAAGATCCTGATTCTGCAGCCTATAAAGCACCAGAGGCTCGCAAGTCTAACCGTAGGGCCACTTCAAAGTCTGATGTGTATGCTTTTGGTGTGCTACTATTGGAGCTTTTGACGGGTAAACATCCTTCACAACATCCTTTCCTTGCGCCAACGGATTTGCAAGATTGGGTTAGAGCAATGAGGGATGATGATGTTAGTGAAGACAACCGGCTTGAAATGCTCACAGAGGTTGCCAGTATTTGCAGTGCAACCTCGCCAGAACAGAGGCCAGCAATGTGGCAAGTACTTAAGATGATACAGGGAATAAAGGATAGTATTGCGATGGAGGACACACTTAACGGACTCTCATAG 2004 0.512 MLKNTDTVNHRAYSPLPPPNTRQHYTNQTMRRLKTFFPLFFYFFTLASSANDLTLPSDAVSLLSFKREADADDKLLYALNERYDYCEWQGVKCAQGRVVRFVVQGIGLRGVFPPNTLTRLDQLRVMSLRNNSLFGPIPDLSPLINLKSLFLDRNHFTGSFPPSILFLHRLLTLSLAHNNLTGSLPVQLNLLDRLISLRLDSNFFNGTLPPLNQTGLRVLNVSANNLTGPVPVTPTLARLKPTSFSGNPGLCGEIIHKQCDDPRSRFFGSSNATVSAPLSQSEESQGSIVVVTSPAKKKHKRISLVLGFTAGVAILAAFALVAVALVRSRKQSGAGKSEMLTETSSPAAGMEVVQNEVGTAEAKVRKMEEAHKSGKLVFCCGEVQQYTLDQLMRASAELLGRGSVGTTYKAVLDSQLIVTVKRMDAGKTAVTSGEVFERHMEMVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSLFNLVHGSSKSARAKPLHWTSCLKIAEDVAHGLAYIHQASSLIHGNLKSSNVLLGVDFEAVITDYSLAFLAESSICEDPDSAAYKAPEARKSNRRATSKSDVYAFGVLLLELLTGKHPSQHPFLAPTDLQDWVRAMRDDDVSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSIAMEDTLNGLS. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02391 667 Gene3D Transferase(Phosphotransferase) domain 1 472 664 - -
Seca12g02391 667 ProSiteProfiles Protein kinase domain profile. 393 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02391 667 Pfam Protein kinase domain 396 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02391 667 SUPERFAMILY Protein kinase-like (PK-like) 397 654 IPR011009 -
Seca12g02391 667 Gene3D Ribonuclease Inhibitor 56 212 IPR032675 -
Seca12g02391 667 Gene3D Ribonuclease Inhibitor 213 262 IPR032675 -
Seca12g02391 667 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g02391 667 Gene3D Phosphorylase Kinase; domain 1 358 470 - -
Seca12g02391 667 FunFam Probable inactive receptor kinase At5g67200 57 167 - -
Seca12g02391 667 Coils Coil 350 370 - -
Seca12g02391 667 SUPERFAMILY L domain-like 55 252 - -
Seca12g02391 667 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 43 655 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02391 Seca-Chr12 34551947 34555291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02391 47 661 Receptor kinase-like Gene Family AT3G50230 54.474 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g02391 Pkinase 4.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02391 - - gmx:100783086 917.146