Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02385 ATGGGTTACAGAAACGACAGTTTCACAGCCAAAGCCGAAGAGAATGCTGTTCAAGAAGCTGCCTCTGGTTTGGAGAGCGTGGAGAAGCTCATCAGGTTGCTCTCTCAGACTCATCAACAATACAACTCTTCTTCCTCTTCCCCTTCAAATTCTAACCAAATCGAGAGGGACTGCAAAGCCGTCGCTGATGTCGCTGTTTCCAAGTTCAAAAGGGTGATTTCTCTTCTGGGTCGAACCAGAACTGGCCATGCTCGTTTCAGAAGAGCCCCTTTGAACCAAACCCCACAACCACAACCACAAGCTTCTTCTGAACCCACCACAATCTTCAACGCCACCCCTTTGCAGCAGATCCCACCCACCCCCACCACCACCCTTAACCATCACCAAATCCACAACACCGAACACCCCAAAATTGGAACCACCACAGAGAGAAAGGACTCATCCAAGACCCTTAATTTTTCCTATTCCTCTGCTGCCAATTCCTTCATCTCGTCCCTCACCGGCGACGCCGACATCAAGCAACCGTCTTCGTCGTCTCCGCCGACGGCCTTTCAGATCACGAATCTGTCTCAGGTGTCATCGGCGGGGAAGCCTCCGCTATCTTCTTCTTCGTTGAAGAGGAAGTGCAGCTCTGAGACCTTGGGTTCTGGCAAGTGTGGCAGTTCCTCTAGCCGCTGTCATTGTTCAAAAAAGAGTCTGGATTGTTCTGTTCTGTGTGACAGCAGGAAAATGAGGTTGAAAAGAGTGGTGAGGGTACCAGCAATAAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGGAAATATGGACAGAAACCAATTAAAGGATCCCCCCATCCAAGGGGTTACTACAAGTGCAGTAGTGTAAGAGGGTGTCCAGCGCGCAAGCATGTAGAGAGAGCTTTGGATGATCCTTCTATGCTGGTAGTTACCTATGAAGGCGAGCACAATCACTCCCTCTCTGCAGCTGATGCTACTAATCTCATTCTAGAATCATCTTAA 1011 0.4906 MGYRNDSFTAKAEENAVQEAASGLESVEKLIRLLSQTHQQYNSSSSSPSNSNQIERDCKAVADVAVSKFKRVISLLGRTRTGHARFRRAPLNQTPQPQPQASSEPTTIFNATPLQQIPPTPTTTLNHHQIHNTEHPKIGTTTERKDSSKTLNFSYSSAANSFISSLTGDADIKQPSSSSPPTAFQITNLSQVSSAGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSLDCSVLCDSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSAADATNLILESS. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02385 336 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g02385 336 MobiDBLite consensus disorder prediction 91 106 - -
Seca12g02385 336 Gene3D WRKY domain 251 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g02385 336 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g02385 336 Pfam WRKY DNA -binding domain 265 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g02385 336 MobiDBLite consensus disorder prediction 191 225 - -
Seca12g02385 336 MobiDBLite consensus disorder prediction 84 106 - -
Seca12g02385 336 FunFam WRKY transcription factor 65 247 324 - -
Seca12g02385 336 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 329 IPR044810 GO:0003700
Seca12g02385 336 Pfam Plant zinc cluster domain 241 261 IPR018872 -
Seca12g02385 336 SUPERFAMILY WRKY DNA-binding domain 260 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g02385 336 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02385 Seca-Chr12 34328766 34330837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02385 13 321 WRKY Transcription Factor Family AT2G24570 45.231 3.74e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g02385 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02385 - - cave:132186740 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02385 12 34328766 34330837 Seca12g02385 12 34328766 34330837 ECH
Seca12g02385 12 34328766 34330837 Seca12g00718 12 6570031 6571497 PCT