Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02373 ATGATCTCCTACATTGCTCTCTGTTCATGGTGGAGGAGGGTTCTTGTTCTCACACTTGTTCTTCTTGTTACCATTGTTAACCAATGTTTTGGCCTAAACCGTGACGGTGTTTTGTTACTTTCTTTCAAGTACGCTGTGAATGACCCTTTCAACGTTCTTGGAAGCTGGAATTACAGAGATGACACACCTTGTGCTTGGAACGGAGTTGCTTGTTCCACCATACCAACACCAACAAATGCTAATTCCACCACCCAATATCGTGTTACTGGGTTATCCTTACCAAATTCTCAGCTTCTGGGTTCGATTCCTTCTGATCTGGGTTCCATTGAACACCTCCAAATTCTTGACCTTTCCAATAATTCCCTCAATGGGTCTCTTCCTTCTTCACTTTTCCAAGGCTCCTCTGAGCTTCAGTTCCTTAACTTGTCTAACAACCTCATAATAGGGGAAGTTCCAGAGTCCATAGTACAGCTAAGGAATCTTCAGTTTCTTAACCTTTCTGACAATGCTTTCGCGGGAAAACTGCCAGAAAATCTCTCAACCATGCAAAACCTAACCGTCGCTTCGTTGAAAAACAATTACTTGATCGGTTTTCTCCCTCGCGGGTTGCGAACTTTGCAGGTTTTGGATCTCTCTACAAATTTGTTGAACGGTACTCTGCCTCCAGATTTCGGTGGTGACGCCATGCGTTACTTGAACATTTCATACAACAGATTCTCCGGCGAAATTCCGCAGGAATTTCCGGTGAAAATTCCACGTAACGCGGTGGTTGACCTCTCTTTCAACAACCTCACCGGCGAGATTCCAGATTCTGAAGTGTTCCTGAATCAACCTTCAGAGTTTTTCTTTGGAAACTCTGATCTATGTGGAGAACCAACCAAGAATGCATGTCCTATTCCTTCTTCACCATCCTCTGAGCCAAGAGTATCATCTCCTACTTCTCCTCCTGCAATCGCTGCAATCCCAAAGACTTTTGATTCTCCTCCTCTGTCTCCAACAGGGTCCTCTGCTTCTGAAAAACAGAGTGGCCTCAGAGGAGGAACTGTTATAGGAATCGTCGTGGGTGATGTCATTGGAATTGCAATCTTAGCCATGATATTTGTCTACGTTTACCGGTTGAAGAAAAAGAAGAAAGTTGAGAGTGCAATAAAGAACGAAGCAGCAGCAGCGAAAAGCGAGAGTTCATCATCAACCTCAGAGTCAAGAGGATTCACGAGGTGGTCGTGTTTGCGAAAGAGAACAGAAGAGGAAGAATCCTCGGAGACACCAGGTTCATCCGACAGCGAAGTGGAACCATCAGGAAAAGATGGTGGTGAGAATCAGAAGCAACAAGAAAACAAAACGGGTACTCTGGTAACGGTTGATGGTGAAAGAGAGCTTGAGCTTGAAACTTTGTTAAAGGCTTCAGCTTACATATTGGGTGCTACTGGTTCAAGCATAATGTATAAAGCTGTGCTTGAAGATGGCACGTCGTTAGCGGTTCGAAGAATCGGTGAGAGTGGTGTGGAACGGTTCAAGGATTTCGAGAATCAGGTTCGGGTCATAGCTAAACTGGTGCACCCTAATCTGGTTCGGGTTCGTGGGTTTTATTGGGGTCATGATGAAAAGCTCATCATCTATGACTTCGTTCCAAATGGGTGCCTTGCCAATGTTCGTTACAGGAAGGTGGGCTCCTCGCCTAGTCACTTACCGTGGGAAATTCGGCTCAAGATAGCGAAAGGGGTGGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCACGTGCATGGAAATTTGAAGCCTAGTAATATTCTATTGGGCAACGACATGGAGCCCAAGATTGGAGACTTTGGGCTTGAGAGAATAGTAACCGGTGACACCAGTTATAAAGCTGGAGGATCCGCGCGGATTTTTGGGAGCAAGAGATCCACCGCCTCACGTGATAGCTTCCAGGACATAACATTTGGGCCCAGCCCAAGCCCGAGCCCGAGTTCGATAAGTGGTGTGTCTCCTTACCATGCTCCTGAGTCGCTCAGGAACCTCAAGCCTCACCCGAAATGGGATGTGTACTCTTTTGGTGTCATGTTTCTTGAACTCCTAACAGGGAAGGTTGTGGTTTTGGATGACATGGGCCAAGGGCCTGGGGTTTTAGTTGAGGATAAGAGCCGGGCTTTGAGGATGGTTGATGCGACTATCCGTGTTGACATGGAGGGTAAGGAAGAGGCCTTGTTGGGCTATTTCAAGTTAGGGTACAGTTGTGTGTCTAGTGTACCACAAAAAAGGCCACCAATGAAAGAGGTGTTACAAGTTCTTGAAAAGATCCCATCTTCTTCTACATCGTCGTATTATTATAGTCACTAA 2340 0.4607 MISYIALCSWWRRVLVLTLVLLVTIVNQCFGLNRDGVLLLSFKYAVNDPFNVLGSWNYRDDTPCAWNGVACSTIPTPTNANSTTQYRVTGLSLPNSQLLGSIPSDLGSIEHLQILDLSNNSLNGSLPSSLFQGSSELQFLNLSNNLIIGEVPESIVQLRNLQFLNLSDNAFAGKLPENLSTMQNLTVASLKNNYLIGFLPRGLRTLQVLDLSTNLLNGTLPPDFGGDAMRYLNISYNRFSGEIPQEFPVKIPRNAVVDLSFNNLTGEIPDSEVFLNQPSEFFFGNSDLCGEPTKNACPIPSSPSSEPRVSSPTSPPAIAAIPKTFDSPPLSPTGSSASEKQSGLRGGTVIGIVVGDVIGIAILAMIFVYVYRLKKKKKVESAIKNEAAAAKSESSSSTSESRGFTRWSCLRKRTEEEESSETPGSSDSEVEPSGKDGGENQKQQENKTGTLVTVDGERELELETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGESGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDFVPNGCLANVRYRKVGSSPSHLPWEIRLKIAKGVARGLAYLHEKKHVHGNLKPSNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDITFGPSPSPSPSSISGVSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKVVVLDDMGQGPGVLVEDKSRALRMVDATIRVDMEGKEEALLGYFKLGYSCVSSVPQKRPPMKEVLQVLEKIPSSSTSSYYYSH. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02373 779 MobiDBLite consensus disorder prediction 388 405 - -
Seca12g02373 779 Pfam Protein kinase domain 473 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02373 779 FunFam Os07g0541700 protein 548 633 - -
Seca12g02373 779 MobiDBLite consensus disorder prediction 294 343 - -
Seca12g02373 779 SUPERFAMILY L domain-like 31 292 - -
Seca12g02373 779 FunFam Leucine-rich repeat receptor-like protein kinase 204 299 - -
Seca12g02373 779 Gene3D Phosphorylase Kinase; domain 1 435 542 - -
Seca12g02373 779 PRINTS Leucine-rich repeat signature 112 125 - -
Seca12g02373 779 PRINTS Leucine-rich repeat signature 203 216 - -
Seca12g02373 779 MobiDBLite consensus disorder prediction 406 420 - -
Seca12g02373 779 MobiDBLite consensus disorder prediction 328 343 - -
Seca12g02373 779 MobiDBLite consensus disorder prediction 642 664 - -
Seca12g02373 779 MobiDBLite consensus disorder prediction 297 312 - -
Seca12g02373 779 SUPERFAMILY Protein kinase-like (PK-like) 472 769 IPR011009 -
Seca12g02373 779 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Seca12g02373 779 FunFam Leucine-rich repeat receptor-like protein kinase 32 201 - -
Seca12g02373 779 SMART LRR_typ_2 158 182 IPR003591 -
Seca12g02373 779 SMART LRR_typ_2 203 226 IPR003591 -
Seca12g02373 779 SMART LRR_typ_2 109 133 IPR003591 -
Seca12g02373 779 MobiDBLite consensus disorder prediction 642 665 - -
Seca12g02373 779 ProSiteProfiles Protein kinase domain profile. 467 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02373 779 Gene3D Ribonuclease Inhibitor 203 299 IPR032675 -
Seca12g02373 779 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Seca12g02373 779 Gene3D Transferase(Phosphotransferase) domain 1 544 776 - -
Seca12g02373 779 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 89 766 - -
Seca12g02373 779 Gene3D Ribonuclease Inhibitor 32 202 IPR032675 -
Seca12g02373 779 MobiDBLite consensus disorder prediction 387 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02373 Seca-Chr12 33783028 33786010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02373 12 779 Receptor kinase-like Gene Family AT4G37250 58.207 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g02373 Pkinase 1.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02373 - - gmx:100776204 1118.22