Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02369 ATGATGGCTGTGTCACGGAGGGAAATGGATCGGATCAAGGGCCCTTGGAGCCCGGAAGAGGACGAGGCCCTTCAGAAGCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCGCTGATCAGCAGGTCCATCCCGGGCCGGTCCGGGAAGTCCTGCAGGCTCAGATGGTGCAACCAGCTTTCTCCTCAGGTAGAGCACCGGGCCTTCACACCCGAAGAGGACGAGACCATAATCAGGGCCCATGCCCGGTTCGGAAACAAGTGGGCCACAATAGCCCGTCTCCTCTCCGGTCGAACCGATAACGCCATAAAAAACCACTGGAATTCCACACTCAAGCGCAAGTGCGCTTCCTTCATCGGAGCAAACAGCGACGATCCCGCCGCCGCAGCCGCCGGTGGTTATAGCCCTCAGCCGCTCAAGAGGTCCGCCAGCTGCGGTGCGCCGGGGAGCCCTTCGGGCTCCGATATGAGCGATTCCGGCGTTCCCGCCGTCATGTCTCCTTCGCACGTGTTCCGGCCCGTGCCGGTTCGACCGCCTGTGGAAACAACCTCGTCGTCACACGAAGAAGACGATGGGCCTCCCACTTTGCTATCGCTTTCTCTTCCCGGCGTGGACTCCTCGGAAGTGTCGAATCGGGCAACGGCGGCGGTGCCGATCAGTCCTGTGCCGATAACCACCGTAACTGCTCAGGCTCCGGTGGCGGCGCAAGAGGTTGGGTTGGGGCCGTTGAACTTCAGTGCGGAGTTGATGGCGGTGATGCATGAGATGATAAGAAATGAAGTGAGGAGTTACATGGAGCAGCAACAAAATGGGATGTGTTTTGAGGGTGTTGATGGGTTCAGGAACATGTCTGTGAAGCGAATTGGGATTAGCAGGGTCGATTCCTAA 885 0.5921 MMAVSRREMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFIGANSDDPAAAAAGGYSPQPLKRSASCGAPGSPSGSDMSDSGVPAVMSPSHVFRPVPVRPPVETTSSSHEEDDGPPTLLSLSLPGVDSSEVSNRATAAVPISPVPITTVTAQAPVAAQEVGLGPLNFSAELMAVMHEMIRNEVRSYMEQQQNGMCFEGVDGFRNMSVKRIGISRVDS. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02369 294 MobiDBLite consensus disorder prediction 146 160 - -
Seca12g02369 294 SMART sant 12 61 IPR001005 -
Seca12g02369 294 SMART sant 64 112 IPR001005 -
Seca12g02369 294 CDD SANT 15 57 IPR001005 -
Seca12g02369 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Seca12g02369 294 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Seca12g02369 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Seca12g02369 294 FunFam MYB transcription factor 13 64 - -
Seca12g02369 294 Gene3D - 66 125 - -
Seca12g02369 294 MobiDBLite consensus disorder prediction 127 196 - -
Seca12g02369 294 Pfam Myb-like DNA-binding domain 16 74 - -
Seca12g02369 294 CDD SANT 67 110 IPR001005 -
Seca12g02369 294 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Seca12g02369 294 PANTHER MYB PROTEIN-RELATED 13 182 - -
Seca12g02369 294 FunFam Transcription factor MYB44 67 113 - -
Seca12g02369 294 Gene3D - 12 64 - -
Seca12g02369 294 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02369 Seca-Chr12 33633905 33634789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02369 5 293 MYB Transcription Factor Family AT4G37260 51.506 1.54e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g02369 Myb_DNA-bind_6 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02369 K09422 - gmx:100806145 375.555