Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02368 ATGGAATCAGTTTCTTATTCAATTCCCTCTACCAAATTCCAATCACTTCATATTTATAGCAGAACCACAAGAATTCAATCCTCCAACTTCACTCTTCCTCTTAGGCCGCCCCCAATTTCAATCAAACCTCTCTATTCTCCTAAATTTCTCATTTTCCATCACCACCGGCTTCGTTGCGTCGCTGAATCCACCAATAACCACCACCACCACCACCACAATCACAACGATCATAACCATCATCACGACCACGACCACCATCACCACCATCACCATCACCATCACCACTCACACGGCATCGATGGTGCTAATCTTACGGGGCCTCAAAAATTGATCATTGGGTTCGCCAAAGCCACCAGATGGATGGACTTGGCAGATATCCTGAGGGAGCATTTACATCTATGCTGCTTCTCCACAGCTTTATTTGTAGCTGCCGCCATTTGCCCTTACACCTTGCCCAAACCCATCGTCAAGCCTTTTCAGAACTCTCTCATTTTCATCGCCTTTCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTTATTGAACTTGGTAGTGGAAAGGTGAACATTCATGTATTAATGGCAATGGCAGCCTTTGCATCATTATTTATGGGAAACTCTTTGGAAGGAGGGTTACTTCTTGCCATGTTTAATCTGGCGCATATAGCTGAAGAGTATTTCACCAGCCGTTCAATGGTTGATGTCAAAGAGTTGAAGGAGAACAATCCAGAATTTGCGCTTGTTTTGGATACGAAGGATGATAAACTTCCTAATACATTTGACTTGGCATACAAGAGGGTTCCTGTGCATGATGTAAATGTAGGATCATATATCCTGGTTGGTGCTGGCGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAAGTTGGAGATAGAATTCCAGGTGGTGCAAGGAACTTAGATGGGAGAATAATTGTTAAGGTAACAAAGACATGGAAGGAATCAACTCTCAACAGAATTGTGCAGTTGACTGAAGAAGCACAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGTTACAGCAGGGTTGTTGTGGTGTTATCAGTTGCTATTGCTGTTATTGGGCCACTTGTATTTAAGTGGCCATTCATTAGTACATCAGCTTGCAGAGGTTCAATTTACAGAGCCCTAGGGCTCATGGTTGCAGCATCACCATGTGCCTTGGCAGTGGCCCCATTGGCATATGCTATAGCTATCAGCTCCTGTGCTAGAAAGGGGATATTACTCAAAGGTGGACATGTTTTGGATGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACGGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACATTAAAAAGAAGGAATCAAACATTTCTTCCTGTTGCGTTCCCTCCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACTCACCCAATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTGCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACTGCCACTGTTAACAGCATTGAGTCAGGAACTGGAGGCGCTAAACTATTGAAAGCATCACTTGGGTCTGTAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAATCAAAAAAGATCAAGGAAGCTGTCAATACATCTTCTTATGGAAGTGAATTTGTTCATGCTGCCCTTTCAGTTAATCAAAAGGTAACATTGATTCACCTAGAGGATAAGCCTCGTCCAGGGGTTTTTAATGTTATTCAAGAATTGCGAGATGAAGCAAAGTTTCGTGTGATGATGCTGACCGGTGATCATGAATCTAGTGCTAGGAGAGTTGCAAGTGCTGTGGGCATCGGTGAGTTTCACTGCAACCTGAAGCCTGAAGATAAGCTGAGACATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGACGCTCCAGCACTTGCAGCTGCAACTGTTGGGATTGTTCTTGCTCATCGTGCTAGTGCAACTGCCATAGCTGTTGCTGATGTGTTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACCTCACTGATTAAGCAAAATGTGGCTCTGGCATTGTCATGCATTATCATGGCTTCCCTTCCGTCTGTTTTGGGATTTCTGCCACTGTGGTTGACGGTTCTTTTACACGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATATATTAAATTTGATTGACGAGGTTAAATCTAGACTTCTGTCTCTCAGGACAAATATCATGGGCTCAAGCAGCATTACAACTGCGAATTTGTAA 2493 0.4348 MESVSYSIPSTKFQSLHIYSRTTRIQSSNFTLPLRPPPISIKPLYSPKFLIFHHHRLRCVAESTNNHHHHHHNHNDHNHHHDHDHHHHHHHHHHHSHGIDGANLTGPQKLIIGFAKATRWMDLADILREHLHLCCFSTALFVAAAICPYTLPKPIVKPFQNSLIFIAFPLVGVSASLDALIELGSGKVNIHVLMAMAAFASLFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENNPEFALVLDTKDDKLPNTFDLAYKRVPVHDVNVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVTKTWKESTLNRIVQLTEEAQLNKPKLQRWLDEFGERYSRVVVVLSVAIAVIGPLVFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHIKKKESNISSCCVPSCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSIAVESFEYFPGRGLTATVNSIESGTGGAKLLKASLGSVDFITSFCQSEDESKKIKEAVNTSSYGSEFVHAALSVNQKVTLIHLEDKPRPGVFNVIQELRDEAKFRVMMLTGDHESSARRVASAVGIGEFHCNLKPEDKLRHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSCIIMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDILNLIDEVKSRLLSLRTNIMGSSSITTANL. 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02368 830 ProSitePatterns E1-E2 ATPases phosphorylation site. 458 464 IPR018303 -
Seca12g02368 830 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 35 827 - -
Seca12g02368 830 Pfam E1-E2 ATPase 264 436 - -
Seca12g02368 830 Gene3D - 228 354 - -
Seca12g02368 830 SFLD p-type atpase 438 739 IPR044492 -
Seca12g02368 830 MobiDBLite consensus disorder prediction 67 97 - -
Seca12g02368 830 Gene3D - 449 737 IPR023214 -
Seca12g02368 830 NCBIfam HAD-IC family P-type ATPase 216 478 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02368 830 NCBIfam HAD-IC family P-type ATPase 566 766 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02368 830 SFLD Haloacid Dehalogenase 438 739 - -
Seca12g02368 830 SUPERFAMILY Calcium ATPase, transduction domain A 264 349 IPR008250 -
Seca12g02368 830 Gene3D - 467 617 IPR023299 GO:0000166
Seca12g02368 830 PRINTS P-type cation-transporting ATPase superfamily signature 609 620 - -
Seca12g02368 830 PRINTS P-type cation-transporting ATPase superfamily signature 686 705 - -
Seca12g02368 830 PRINTS P-type cation-transporting ATPase superfamily signature 710 722 - -
Seca12g02368 830 PRINTS P-type cation-transporting ATPase superfamily signature 456 470 - -
Seca12g02368 830 PRINTS P-type cation-transporting ATPase superfamily signature 632 642 - -
Seca12g02368 830 NCBIfam heavy metal translocating P-type ATPase 190 788 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca12g02368 830 CDD P-type_ATPase_HM 134 788 - -
Seca12g02368 830 MobiDBLite consensus disorder prediction 65 100 - -
Seca12g02368 830 SUPERFAMILY HAD-like 454 786 IPR036412 -
Seca12g02368 830 SUPERFAMILY Calcium ATPase, transmembrane domain M 192 771 IPR023298 -
Seca12g02368 830 Pfam haloacid dehalogenase-like hydrolase 454 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02368 Seca-Chr12 33613559 33622287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02368 90 811 Primary Pumps ATPases AT4G37270 75.623 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02368 K01534 - gmx:100776309 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02368 12 33613559 33622287 Seca12g02368 12 33613559 33622287 ECH