LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g02344	ATGTTCTTGCTCGCTTTTCTTCTTCAATTCTCATCACTGCAGTTTCCCTCACTAGGGTACAATTTCCCAGACAGGTATTTCATCAATTGTGGCTCAGATAGTGATGTAACCGAAAGTGGCCACCGTTACGTTGGGGAATCAAACCCTATAGCAAGTTTCAGCAGCAACAGCAATACAGAAAGCAATCAATCAACAGTGCCTTCACCTCTGTACCAAACAGCAAGAATTTTTCGAAGTCAATCTTGGTATGAGTTCAGTACTGATATTAATAGCACCTATCTGGTACGCCTCCATTTCTTTGCTTTCTCTTCGCCAAGTAATCTTTCCACAGCTAAGTTCAACGTTTCTGTTCCTGGCTTCTGGCTTTTGCCAAATTTCGATGTCACAAATACTACTAACTCTGCTTTAGTGAAAGAGTTCTACATGAAAATCACTCGCCGTAGATTCAAAATCACTTTCACACCTCTAGCATCATCATTCGCGTTTGTAAATGCTATAGAACTCTTTGTCCTCCCCCTCCATTTGATGGCCGATTCAGTCGCACGTTTCACTTATGGCAATGATAGGCAGAGTCTACCTTACAACGGCAAATTACTCTCTCGGACATTGGAAACCAAACATAGGATCAACGTTGGTGGCCAAACAGTGACAAGGGGCAACGATAACTTATTGAGAAACTGGTCTCCTGATGATAGTTTTCTCAGTAATCCGAGAAACGCGAAGAATAGTTCCCCGTACAATGGTGAAATTAAGTACAATGTTGGCGATGACTCTGATGGTCCAAATTCAAATCAATATACTGCGCCAAATGCTGTCTACCAAACTGCTAAAGAGATTAATAACATCTCTGCCATTGCTGCTGGAGGCTTCATCGGAGTAAGATCAAACATGAACATAACTTGGCGTCTTCCCGTGGACAAGAATACTGATCATCTTGTTCGGTTTCACTTTTGTGACATTCATAATCAACAGAGTGGTCTTACAATCTTTGTACTGTTCATTTACGACAGTTATGTTATCAATGTTAATGACGATGAGAAACTTGCGAGCCCGCGGCCTAATCCTTATTTTTATGATTTTGTGGTTCACTCTGATGACTCTGGGTTCATGAAGATCAGTATAGCACCTAATGCATCTGTTCCTCAACCAAATGCGTTTTTGAACGGACTAGAAATAATGAAACTGATTGAATCATCAGGTTCTGCTCCCCAGGACCTGAATGACTCTAACTCCAACCATAGTAGTCTTCCCGTGGTGCTAGGTTCAGCTCTTGGAGGTTTAGTTCTGGTTTCTGTTGTGATAGCTGTTGGGTTTCTTTGGCGTCGTAAAATGAGGAAACAAAAGCCAGTTGACGGTTCTGATTGGTTGCCAATTCCCATTACTGCTGGAGGGAGTTCTCACAGCAGATTGACTGAGGGAACCACACAAGGCTCCCCTCTTCCCAACATAAATCTTGGCCTAAAAATCCCCTTGCTTGATCTTCAATCTGCAACCAAGAACTTTGATGCAAAGCAGATAATTGGCAAGGGTGGTTTTGGCAATGTCTATAAGGGAGTTCTCAAGAATGGCGTAAGAGTGGCTGTGAAAAGAGGTGAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCCAAGATTCGTCACAGGCACCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTATGAAATGATTCTGGTTTATGAGTATATGGAGAAAGGGACACTCAGAGACCATTTGTACAATACAAAATTGCCAACCTTGTCTTGGAAGCAGAGGCTTCAAATTTGTATTGACGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTGAAATCCACCAATATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCCTTTCAAGGACAGGTCCTCTTGATCATCAACCTTATGTTAGCACTGGTGTTAAAGGCACTTTTGGGTACCTTGATCCTGAGTATTTTAGGTCACAACAGCTGACAGAAAAATCTGATGTGTATTCATTTGGGGTAGTTCTTCTTGAAGTTTTATGTGCAAGACCAGCCATTGATCCATTGCTTCCAAGGGATCAGGTGAACTTGGCTGAATGGGGAATGCTTTGCAAAGACAAGGGGATACTTGAAGAGATCATTGATCCTTCCATCAAGGGGCAAATAGAACAAAACTCACTCAGAAAGTTTAGTGACACTGTAGAGAAGTGCTTACAAGAAGATGGTTCTGATAGGCCAACAATGGGTGATGTGTTGTGGGACTTGGAGTATGTGTTGCAGCTTCAGCGAGGTGCAATACACAGAGAGCCACATGAGGATAGTTCTAGCAGTGTTTCTGCATCAATTCAATTGCCCAATGTCCGGCGTCTTCCTTCACTCTCTACACTAAGTGAACTCGATGACTTATCGATTGCAAGGATTGATGAATCTGATATTGCAGCAGATTCCGTTTTCTCTCAGTTGAAAATTGATGATGCTAGATAG	2532	0.425	MFLLAFLLQFSSLQFPSLGYNFPDRYFINCGSDSDVTESGHRYVGESNPIASFSSNSNTESNQSTVPSPLYQTARIFRSQSWYEFSTDINSTYLVRLHFFAFSSPSNLSTAKFNVSVPGFWLLPNFDVTNTTNSALVKEFYMKITRRRFKITFTPLASSFAFVNAIELFVLPLHLMADSVARFTYGNDRQSLPYNGKLLSRTLETKHRINVGGQTVTRGNDNLLRNWSPDDSFLSNPRNAKNSSPYNGEIKYNVGDDSDGPNSNQYTAPNAVYQTAKEINNISAIAAGGFIGVRSNMNITWRLPVDKNTDHLVRFHFCDIHNQQSGLTIFVLFIYDSYVINVNDDEKLASPRPNPYFYDFVVHSDDSGFMKISIAPNASVPQPNAFLNGLEIMKLIESSGSAPQDLNDSNSNHSSLPVVLGSALGGLVLVSVVIAVGFLWRRKMRKQKPVDGSDWLPIPITAGGSSHSRLTEGTTQGSPLPNINLGLKIPLLDLQSATKNFDAKQIIGKGGFGNVYKGVLKNGVRVAVKRGEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERYEMILVYEYMEKGTLRDHLYNTKLPTLSWKQRLQICIDAARGLHYLHKGAAGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPLDHQPYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARPAIDPLLPRDQVNLAEWGMLCKDKGILEEIIDPSIKGQIEQNSLRKFSDTVEKCLQEDGSDRPTMGDVLWDLEYVLQLQRGAIHREPHEDSSSSVSASIQLPNVRRLPSLSTLSELDDLSIARIDESDIAADSVFSQLKIDDAR.	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g02344	843	MobiDBLite	consensus disorder prediction	234	249	-	-
	Seca12g02344	843	SUPERFAMILY	Protein kinase-like (PK-like)	491	802	IPR011009	-
	Seca12g02344	843	MobiDBLite	consensus disorder prediction	234	264	-	-
	Seca12g02344	843	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	621	633	IPR008271	GO:0004672\|GO:0006468
	Seca12g02344	843	Pfam	Malectin-like domain	28	394	IPR024788	-
	Seca12g02344	843	Gene3D	-	202	396	-	-
	Seca12g02344	843	Gene3D	-	25	170	-	-
	Seca12g02344	843	ProSitePatterns	Protein kinases ATP-binding region signature.	507	529	IPR017441	GO:0005524
	Seca12g02344	843	Gene3D	Phosphorylase Kinase; domain 1	467	576	-	-
	Seca12g02344	843	Gene3D	Transferase(Phosphotransferase) domain 1	577	796	-	-
	Seca12g02344	843	PANTHER	OS07G0166700 PROTEIN	488	778	IPR045272	GO:0004714\|GO:0006468
	Seca12g02344	843	FunFam	receptor-like protein kinase FERONIA	466	576	-	-
	Seca12g02344	843	CDD	STKc_IRAK	507	772	-	-
	Seca12g02344	843	FunFam	Receptor-like protein kinase FERONIA	577	793	-	-
	Seca12g02344	843	Pfam	Protein tyrosine and serine/threonine kinase	504	768	IPR001245	GO:0004672\|GO:0006468
	Seca12g02344	843	FunFam	Putative receptor-like protein kinase	201	396	-	-
	Seca12g02344	843	ProSiteProfiles	Protein kinase domain profile.	501	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g02344	843	FunFam	Putative receptor-like protein kinase	25	172	-	-
	Seca12g02344	843	SMART	serkin_6	501	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g02344	Seca-Chr12	33087266	33089797	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g02344	20	843	Receptor kinase-like Gene Family	AT2G23200	46.793	0.0	670

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca12g02344		Malectin_like	7.2e-27	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g02344	-		-	gmx:100789555	1102.81