Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02342 ATGGCAACCCTTCAGCTCTACAGAATTCTACACTCTCTGTTTTCACTTGCTTTTCTTCTTCAATTATCATCACTTCCTTCACTTGGGTACAACTTCCCATACAAGTATTTCATCAATTGTGGTTCAGACAGTGATGTAACCGAAAGTGGCCACGGTTACATTGGAGAATCAAACCCTGCTTATCCTAAAACCAGTTTTAACAGCAGCAATACAGAAAGCAATCACTCATCAGTGCCTTCACTTCTCTACCAAACAGCGAGGATTTTTCGAAGTCAATCTTGGTATGAGTTCAATACCGACATAACAAATAGCACCTACCTGGTACGCCTCCATTTCTTTGCTTTCTCTTCCGCAACTAACCTTTCCACTGCTAGTTTCAACGTTTCTATTCCTGGGTTCATGTTGTTGCCAAATTTCGATGCTAGAAATACTACCAATTCTGCTTTAGTAAAAGAGTTTTTCATTAATGCCACTCGCCACAGTTTAAAAATCACTTTCACACCTCTGGCCTCATCATTCGCATTTGTTAACGCCATAGAATTGTTCATACTCCCCCTCCATTTTATCTTATCTACTTACGACAGCGTTTTGTTCTCTCGTGTGTTGGAGACCAAACATAGGGTTAATGTTGGTGGCCAAATTGTCACAAGGGGAAATGATAGCTTATTGAGAAATTGGTTTCCTGATGATAGTTATCTCATTAATCCTTGGAATGCGAAGAATAGTTCATCGTATAACCGTCAAATTAAGTACTATGCAGATGATGACTCTTATGGTCCAAACTCAAGTGAGTATATTGCCCCAAATGTTATCTATCAAACTGCCAAAGAGATAAAATATGGCTCTCTCAGTTTAGACATACGTTGGCATCTTCCTGTGGACAAGAACACAGATCACCTTGTTCGTCTTCAGTTCTGTGACATTTTTAATCAAAAGCGAGGTCTTACAGTTATCCATCTCTTCATTGATGAACACTATGTTATGAATGTAAATGATGACAGTGACGTGGCAAACCAGTTTCCTGCTCCTTATTATTATGATTTTGTGGTTCACTCTGATGACTCTGGCTTCATGAAGATCAGCGTAGCGCCTAATAGATTTGATCCTAGACTAAATGCGTTTTTAAATGGGATAGAAATAATGAAAGTGATTGAATTATCAAATTTTGTTCCCCTGGACCTGGATGAATCTAAGCATAGTCGTGTTCCTGTGGTGCTGGGTTCAGTTCTTGGAGGTTTAGTTCTGGTTTCTGTTGTGATAGTTGGGTTTCTTTGGCTTCTTAAATACAGGAGATTGACCGAGGGAACTAGTCAAGGCTCCTCTCTCTCCAGCATAAATCTTGGGCTGAAAATCTCCTTGATTGATCTTCAACTGGCAACAGGGAATTTTGATGAAAAGCAGATAATTGGCAAGGGTGGTTTTGGCAACGTTTATAAGGGGGTTCTCAAGAATGGTGTGACAGTGGCTGTGAAAAGAGGAGAGCCAGGGTCAAGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCCAAGATTCGTCACAAGCACCTTGTTTCCTTGATTGGGTATTGCGATGAAAGGAATGAGATGATACTGGTTTATGAGTACATGGAGAAAGGACCACTTAGAGACCATTTGTACAATACAAATTTGCCAACCTTGTCTTGGAAGCAGAGGCTTGAAATTTGCATTGGAGCTGCCAGAGGTCTTCATTACCTTCACAAAGGAGTAGCTGGGGGAATCATTCACCGTGATGTGAAATCAACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCATTTCAAAGATAGGTTCTCTTGATCATCAACCACATGTCAGCACAGATGTTAAAGGCACTTTTGGGTACCTTGATCCCGAGTATTTTATGTCGCTACAGCTGACAGAAAAATCTGATGTGTATTCATTTGGGGTAGTTCTTCTTGAAGTTTTATGTGCAAGACCAGCCATTGATCCATCGCTTCCAAGAAATCAGGTGAACTTGGCAGAATGGGGAATGCTTTGCAAAAGCAAGGGGATAATTGATAAGATCATTGATCCTTCTATCAAAGGACAAATAGATCAAAACTCACTCAGAAAATTCAGTGATACGGTCGAAAAATGCTTACAAGAAGATGGTTCTGATAGGCCAACAATGGGTAATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGCAAGGTGCAGTACAGAGAGAGCCGCATAAGGATAGTTCTAGCAGTGCTTATGCTTCACTTCAATTGCCCAATGTTCCGCGTCTTCCTTCTTTCTCTGTACTAAGTGAAGTGGATGGCATGTCAATTGTGAGGGGTGATGATTGA 2364 0.4091 MATLQLYRILHSLFSLAFLLQLSSLPSLGYNFPYKYFINCGSDSDVTESGHGYIGESNPAYPKTSFNSSNTESNHSSVPSLLYQTARIFRSQSWYEFNTDITNSTYLVRLHFFAFSSATNLSTASFNVSIPGFMLLPNFDARNTTNSALVKEFFINATRHSLKITFTPLASSFAFVNAIELFILPLHFILSTYDSVLFSRVLETKHRVNVGGQIVTRGNDSLLRNWFPDDSYLINPWNAKNSSSYNRQIKYYADDDSYGPNSSEYIAPNVIYQTAKEIKYGSLSLDIRWHLPVDKNTDHLVRLQFCDIFNQKRGLTVIHLFIDEHYVMNVNDDSDVANQFPAPYYYDFVVHSDDSGFMKISVAPNRFDPRLNAFLNGIEIMKVIELSNFVPLDLDESKHSRVPVVLGSVLGGLVLVSVVIVGFLWLLKYRRLTEGTSQGSSLSSINLGLKISLIDLQLATGNFDEKQIIGKGGFGNVYKGVLKNGVTVAVKRGEPGSSQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERNEMILVYEYMEKGPLRDHLYNTNLPTLSWKQRLEICIGAARGLHYLHKGVAGGIIHRDVKSTNILLDENLVAKVADFGISKIGSLDHQPHVSTDVKGTFGYLDPEYFMSLQLTEKSDVYSFGVVLLEVLCARPAIDPSLPRNQVNLAEWGMLCKSKGIIDKIIDPSIKGQIDQNSLRKFSDTVEKCLQEDGSDRPTMGNVLWDLEYALQLQQGAVQREPHKDSSSSAYASLQLPNVPRLPSFSVLSEVDGMSIVRGDD. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02342 787 Gene3D Transferase(Phosphotransferase) domain 1 539 758 - -
Seca12g02342 787 FunFam FERONIA receptor-like kinase 35 185 - -
Seca12g02342 787 SUPERFAMILY Protein kinase-like (PK-like) 440 734 IPR011009 -
Seca12g02342 787 FunFam receptor-like protein kinase FERONIA 429 538 - -
Seca12g02342 787 PANTHER OS07G0166700 PROTEIN 450 740 IPR045272 GO:0004714|GO:0006468
Seca12g02342 787 SMART serkin_6 463 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02342 787 Gene3D Phosphorylase Kinase; domain 1 428 538 - -
Seca12g02342 787 CDD STKc_IRAK 469 734 - -
Seca12g02342 787 Pfam Protein tyrosine and serine/threonine kinase 466 730 IPR001245 GO:0004672|GO:0006468
Seca12g02342 787 FunFam Receptor-like protein kinase FERONIA 539 755 - -
Seca12g02342 787 Gene3D - 34 183 - -
Seca12g02342 787 Gene3D - 202 384 - -
Seca12g02342 787 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Seca12g02342 787 ProSiteProfiles Protein kinase domain profile. 463 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02342 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Seca12g02342 787 Pfam Malectin-like domain 38 383 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02342 Seca-Chr12 33025352 33027760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02342 12 773 Receptor kinase-like Gene Family AT2G23200 44.154 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca12g02342 Malectin_like 1.6e-28 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02342 - - gmx:100789555 958.747