LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g02332	ATGACCTTCATCAAAGAAGGGGAAGTTGACGATGATCATGTGTCAATCAACAATAAACAAGATGTAGATGGTGGATCACAGATCATTACCAACTATGAAATTGTGACCCCTGAAGAGGATGATAACTTGGGAGAATGGTTGAGTTTAGGCCTCAAAGGAGACATGCCTCTGGAAGCAGCAGATCAAAACCAAGATAACAATTATTCCCAATCAAAACCTCTCCATAACAAGGTATTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTGGGTGGTCATCAGAATGCACACAAAAGGGAAAGAGAAGCAGCTAGAAGTTACCAATCTCATAGAATGATGACTGCATCAATGGGACTTGCTTACTCTTCTTTGGCAACAAGATCACTGGGAATCCAGCCACACTCACTTGTGCACAAGCCAAGCAGAGACAAGTCTGCTATGGTGGCTAGATTCAATAATAATGATGCAAATTCTGGGATTAGAATGGCATGGACACCCTTTATGCTTGAACAAGCTATGGATTTCATTTGGCCAGGAAGCTTTCGAATGGAGTTGTCAAAGCAAGAATCAGATATAAATAAACTTGACTTAGATCTTCGGCTCTGA	618	0.411	MTFIKEGEVDDDHVSINNKQDVDGGSQIITNYEIVTPEEDDNLGEWLSLGLKGDMPLEAADQNQDNNYSQSKPLHNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTASMGLAYSSLATRSLGIQPHSLVHKPSRDKSAMVARFNNNDANSGIRMAWTPFMLEQAMDFIWPGSFRMELSKQESDINKLDLDLRL.	206

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g02332	205	ProSitePatterns	Zinc finger C2H2 type domain signature.	81	101	IPR013087	-
	Seca12g02332	205	SUPERFAMILY	beta-beta-alpha zinc fingers	75	106	IPR036236	-
	Seca12g02332	205	Gene3D	Classic Zinc Finger	60	127	-	-
	Seca12g02332	205	ProSiteProfiles	Zinc finger C2H2 type domain profile.	79	106	IPR013087	-
	Seca12g02332	205	PANTHER	ZINC FINGER PROTEIN 4-LIKE	19	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g02332	Seca-Chr12	32776679	32777296	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g02332	25	196	C2H2 Transcription Factor Family	AT1G24625	35.227	5.19e-23	90.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g02332	-		-	ccaj:109809498	286.574

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g02332	12	32776679	32777296	Seca12g02332	12	32776679	32777296	ECH