Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02323 ATGTCTCCAAACCCGCAAGAGCACGAGCAACCACTCTTAGTGGAAGAAAAGCAACAAGAAACAGCTTACGATTCTTCAGAGAAGATCGTGGTGGTTGGAATCGACGAGGAAGGGAGTAACTGGGGTCAGGTGCCACCATTCTCGTGGAAGAAGCTATGGCTCTTCACAGGCCCTGGCTTTCTTATGAGTATAGCGTTCCTGGATCCAGGGAACCTGGAAGGGGACCTTCAGGCTGGTGCAATTGCAGGGTACTCGTTGTTGTGGCTTCTGATGTGGGCCACGGCCATGGGGCTCTTGATTCAGCTCTTGTCTGCGAGGCTCGGCGTGGCCACTGGGAAGCACTTGGCTGAGCTGTGTAGGGAAGAGTACCCCACGTGGGCCAGGATGGTGCTCTGGGTCATGGCTGAGGTTGCTCTCATTGGTTCCGATATACAAGAGGTTATTGGGAGTGCTATTGCTATCAGGATTCTGAGTAATGGACTTGTGCCCCTTTGGGCTGGGGTTGTCATTACAGCTCTTGATTGTTTTATCTTTCTCTTTCTTGAGAACTATGGTGTGAGGTCATTGGAAGCTTTTTTTGCTGTTCTTATTGGTATAATGGCACTGGCGTTCGCATGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTTCTTGTTGGCATTTTGATTCCAAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGCTGCCTTATAATGCCTCACAATGTGTTCTTGCATTCTGCTCTTGTTCAATCAAGGCAGGTTGATCACAGAAACAAAGGCCGGGTTCAAGAGGCTCTTAACTATTACTCTATAGAGTCCACACTTGCCCTTATAGTCTCCTTTGTCATTAATATATTTGTCACAACTGTGTTTGCTAAAGGGTTTTATGGTTCTGAACTTGCAAGTAGCATTGGTCTTGTAAATGCAGGACAGTATCTTCAGGAGACGTATGGGGGTGGATTATTTCCAATATTATATATATGGGGTATTGGGTTATTGGCAGCTGGCCAAAGTAGCACCATTACTGGTACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAGGTTAAAAAAATGGATAAGGGCATTAATTACCCGAAGTTTTGCCATAATCCCAACCATGATAGTTGCTCTTATATTTGACACCTCAGAGGCATCACTAGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCACTTATTCCTTTGCTCTGTCTGGTGTCAAAGGAGGAAATAATGGGCACTTTCAGAATTGGCGCTGTCCTCAAGGTATAA 1320 0.4568 MSPNPQEHEQPLLVEEKQQETAYDSSEKIVVVGIDEEGSNWGQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPTWARMVLWVMAEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRSLEAFFAVLIGIMALAFAWMFGEAKPSGKELLVGILIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDHRNKGRVQEALNYYSIESTLALIVSFVINIFVTTVFAKGFYGSELASSIGLVNAGQYLQETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSFAIIPTMIVALIFDTSEASLDVLNEWLNVLQSVQIPFALIPLLCLVSKEEIMGTFRIGAVLKV. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02323 439 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 50 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 NCBIfam Nramp family divalent metal transporter 57 426 - -
Seca12g02323 439 Hamap Divalent metal cation transporter MntH [mntH]. 38 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 36 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 Pfam Natural resistance-associated macrophage protein 73 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 131 157 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 235 258 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 404 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca12g02323 439 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02323 Seca-Chr12 32188375 32192824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02323 5 438 Inorganic Solute Cotransporters AT2G23150 79.819 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02323 K21398 - gmx:100812381 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02323 12 32188375 32192824 Seca12g02323 12 32188375 32192824 ECH