Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02316 ATGGCTCTACGTCTCTCCCTCCGTCTCTGTGGACTCGACGCATCTGCCTCCGTCTCAGTGGACACCATCTCCGTCGGGCTCTGCACTCGCACAGTCGTGCTCTGCTTCCACCATTCTGCGCTTCTAGTTTTGTCAAAGAACCGCAGGGCTAGATGGAAGACCAAGCAACTTGAGAGGGATTATGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCAACATATGATTCTATTACGAAGGAGAATGAGAAACTCAAATCTGAGATTAGTATAGTTTTAGGTGCTACGCTTAGAGTAGTCAGCTTGGGAAGTCCAGCTTTGATAATTTACTATATGGGAAAGGAAGCTAGACTGTCAAAATCTAGAACAAGCAAAATATCTTGGATCAGAATCAAGGCTGGTGCTTTGATGCTTGCCGACAATGGCATTTGTTGCATTGATGAATTTGACAAGATGGACATCAAAGATCACCTATATGCTTATTTAGAGCTTGATTTTGGGTATCTTATTTCTGTAAGAATATGA 525 0.4305 MALRLSLRLCGLDASASVSVDTISVGLCTRTVVLCFHHSALLVLSKNRRARWKTKQLERDYDVLKASYDSLLSTYDSITKENEKLKSEISIVLGATLRVVSLGSPALIIYYMGKEARLSKSRTSKISWIRIKAGALMLADNGICCIDEFDKMDIKDHLYAYLELDFGYLISVRI. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02316 174 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 46 90 IPR045224 GO:0003700
Seca12g02316 174 Gene3D - 111 163 IPR027417 -
Seca12g02316 174 Coils Coil 68 88 - -
Seca12g02316 174 ProSiteProfiles MCM family domain profile. 130 157 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g02316 174 Pfam MCM P-loop domain 126 157 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g02316 174 ProSitePatterns MCM family signature. 142 150 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca12g02316 174 Pfam Homeobox associated leucine zipper 55 89 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02316 Seca-Chr12 32025006 32028813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02316 25 90 Homeobox Transcription Factor Family AT3G01470 56.061 1.52e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02316 K09338 - nnu:104593226 83.5741