Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02303 ATGTGTAATTGTTGCTGCACACGCCTTAAATATGCGCACGAGCCACCAGCACTACTCCTCCGCTTCTTGCTAGTGTGCACCCTTGTCGCCTTGCATGCGCCGGTTGCGCAACCCCCTAACCTGCGCATCCCTACCCACCCAAGCGAAACCAACACCACCACTATCCTTCACCATAGTCACAGAGCCCAGATCTCAAGCTCCAATCGCCAAGGCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGACTACGAGGCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTATAGTGAGGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCTAAAACTCCAAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGTTGAGAACCTTTTCTTGTCACATGAATACTTTGGTTTTGAATTGCAGGCCTTAGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCATAACGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCATCCTGGAAAGGAGTATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTGGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGCCACGACAACCACGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTGAATAAGTATCACCTGGAGCTTGATCCACAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATCCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTGCGATATGACCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1263 0.4386 MCNCCCTRLKYAHEPPALLLRFLLVCTLVALHAPVAQPPNLRIPTHPSETNTTTILHHSHRAQISSSNRQGMSKARVYTDVNVLRPKEYWDYEALTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVENLFLSHEYFGFELQALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02303 420 PANTHER CASEIN KINASE II SUBUNIT ALPHA 62 416 IPR045216 GO:0004674|GO:0006468
Seca12g02303 420 Gene3D Transferase(Phosphotransferase) domain 1 182 407 - -
Seca12g02303 420 SUPERFAMILY Protein kinase-like (PK-like) 76 410 IPR011009 -
Seca12g02303 420 Pfam Protein kinase domain 105 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02303 420 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Seca12g02303 420 ProSiteProfiles Protein kinase domain profile. 105 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02303 420 FunFam Casein kinase II subunit alpha 91 181 - -
Seca12g02303 420 Gene3D Phosphorylase Kinase; domain 1 97 154 - -
Seca12g02303 420 Gene3D Phosphorylase Kinase; domain 1 157 181 - -
Seca12g02303 420 SMART serkin_6 105 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02303 420 CDD STKc_CK2_alpha 86 406 IPR045216 GO:0004674|GO:0006468
Seca12g02303 420 FunFam Casein kinase II subunit alpha 214 409 - -
Seca12g02303 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02303 Seca-Chr12 31663352 31670268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02303 103 406 Core Cell Cycle Gene Families AT1G76540 28.000 5.39e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca12g02303 Pkinase 7.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02303 K03097 - gmx:100819679 727.243