Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02297 ATGAGTTTTTTTAATAAGTGTTATCCTGATATTGCTGATCTTCCTGTCGCAGAGGGCACTGGATCATATACTGTTGTTTCCCTTGTTAAAACTTTAGGATGTAGATCCCGCCGCCAGCTTGGGGAGCGAGTCCATTTTTGTGTTTTTTGTGATTTACCCATTCCTACCTATGGACGACTGAACCTTTGTGAGCATGCTTTCTATCTCGATTGTGCTAGAAGTAAGTCATTGTGCTACCTATGTGATGAACGAATCCAAAAAATTCAGACAATAAAAACGATGGAAGGAATTCTCATATGTGCATCTTCTCATTGTCTCAAGTCTTTCTTGAAGAAGGTTGAATTTGAATCGCATATCCAAGACGACTAG 369 0.3957 MSFFNKCYPDIADLPVAEGTGSYTVVSLVKTLGCRSRRQLGERVHFCVFCDLPIPTYGRLNLCEHAFYLDCARSKSLCYLCDERIQKIQTIKTMEGILICASSHCLKSFLKKVEFESHIQDD. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02297 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 96 IPR013083 -
Seca12g02297 122 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 10 121 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02297 Seca-Chr12 31560712 31561080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02297 11 121 C2H2 Transcription Factor Family AT5G01160 70.270 1.07e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02297 K15685 - gmx:100817582 186.808