Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02291 ATGACGCAATTCACACCACCACTACCTCCTTTGCACCAAATCACACCTTCTTCCATGAACAAAAATAATCAAATTCCTAGAACTAGGCCATGGCCTACAGGCTTCCCCACATCCAAGGCCCTCAGTAGCTTCGGAGATGCAAACTGCATGGAACAGTTACTTGTTCACTGTGCCAACGCCATCGAAACCAACGATGTAACTCTCGCCCAACAGATCCTTTGGGTCCTTAACAACCTAGCACTCCCAGATGGTGACTCCAACCAACGCCTAGCCTACAGTTTCCTTAGAGCTCTAACTGCTCGAGCAGCCAAGACTGGCAGTTGCAAGATGCTGTTAGAACAAGTTGTTGCAAACACCCCTAACAACCTCACTATTGACACTCACAAATTCTCAATCCTTGAATTAGCTAATTTCGTTGACTTAACCCCTTGGCACCGTTTCGGCTTCACAGCAGCTAATGCCGCCATTCTAGAAGCTACTGAAGGATTCTCTGTCATCCACATCGTGGACTTAAGCTTGACACATTGCATGCAGATTCCTACACTGATAGACGCTATTGCTAACCGTCATGACGTGGCTCCTCTAATCAAACTAACAGTGGTAGCTGATGTTGCTATGAGAGAAATTCCACCTATGCTTGACCTTTCCTTGGATGAACTCGGTGCTAAATTAGTCAATTTCGCAAGGTCAAGAAACGTGATCATGGAATTTAGAGTGGTTACTTCAAGTTACACAGATGGTTTCGCTGCTTTGCTTGAACATTTAAGAGTGCAACGCTTGGTTCACATTGCAGAAGCTGCTCCTGCTGAAGCTTTGATTATAAACTGTCACATGATGCTTCATTATATACCTGATGAAACCCTATCTGCAATTCCTGGCACAGACTTAGCCTCTTATGTTTATGATTCTTCTTCTTGCACTGCTTCTGTTACTCCTACCATGTCGCTGAGATCATTGTTCCTTAAAGCCCTGCGGGGTTTAGATCCAACGGCTGTGCTTTTGGTAGATGAGGATGCAGATTTAACATCGAATAACTTGGTTTCGAGACTAAAGTCTGCGTTTAATTATCTATGGATACCTTATGACACTGTGGACACGTTCCTTCCGAGAGGGAGTAAACAAAGGCAGTGGTATGAAGCGGACATTTGCTGGAAGATTGAGAATGTGATAGCACATGAAGGGATTCATAGAGTTGAACGGCTTGAGGCTAAGAGCATGTGGGAGCAACGAATGAGAAACGCAAACTTCCAAGGGATAGCTTTCAGTGAGGACTCTGTTGCAGAGGTGAAGGCCATGCTGGATGAACATGCTGCTGGATGGGGATTAAAGAAGGATGATGAACATATTGTGCTCACATGGAAAGGCCACAATGTAGTCTTTGCCTCTGCTTGGTTGCCTGCTTGA 1404 0.4501 MTQFTPPLPPLHQITPSSMNKNNQIPRTRPWPTGFPTSKALSSFGDANCMEQLLVHCANAIETNDVTLAQQILWVLNNLALPDGDSNQRLAYSFLRALTARAAKTGSCKMLLEQVVANTPNNLTIDTHKFSILELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIANRHDVAPLIKLTVVADVAMREIPPMLDLSLDELGAKLVNFARSRNVIMEFRVVTSSYTDGFAALLEHLRVQRLVHIAEAAPAEALIINCHMMLHYIPDETLSAIPGTDLASYVYDSSSCTASVTPTMSLRSLFLKALRGLDPTAVLLVDEDADLTSNNLVSRLKSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGIHRVERLEAKSMWEQRMRNANFQGIAFSEDSVAEVKAMLDEHAAGWGLKKDDEHIVLTWKGHNVVFASAWLPA. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02291 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 454 IPR005202 -
Seca12g02291 467 Pfam GRAS domain family 50 464 IPR005202 -
Seca12g02291 467 MobiDBLite consensus disorder prediction 14 33 - -
Seca12g02291 467 MobiDBLite consensus disorder prediction 1 33 - -
Seca12g02291 467 ProSiteProfiles GRAS family profile. 41 465 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02291 Seca-Chr12 31449305 31450708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02291 32 466 GRAS Transcription Factor Family AT3G49950 56.948 1.58e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g02291 GRAS 1.4e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02291 - - gmx:100814364 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02291 12 31449305 31450708 Seca12g02291 12 31449305 31450708 ECH