Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02290 ATGGCAATGGTTTATGGGTTGTTTCATCCCATCAAAAGTGTGTGTGGGCTGCGTCAGAATGGGAGGTTGAGGGTAAAAGTGGTGAGGGTTTGGAATATGAGTTATGTTGCTAAGCCTAACGATCCATATGCAAGGCAGATGGTTTTTATTGATGAAGAGGGAGGAAGGATTGAGGCCACCATACCCAAACAACACATGAACAAATTTGCTCACGTTTTGGTGGAGGGACAGATCTATAAGATTACAAATTTCGGGCTCCTTCGTAACACAGGAAAATTCAGAGCAACTGATCATGAGTTTAAGGTGACTTTCAATGCCACGACAAAGGTGATTCCTTGCCCAACTATGTCCATCCCCACCTCTGGATATGCCTTGATGAAGACGGAAGACATAAAGAGGACGAAAGGAAAATCAGATTATCTTTTAGATTTCATGGGCATGGTGTCGGCAGTTTCAGAGGAGATTACCTTGAGCAAGGAAGGAAGGCGGACACGGATGATGTTGATTGATTTGGTTGATGAGATGGGAGAAATACGACTAGCTTTGTTTGGCGATATGATAGATGTGGTTGCTGGTTTTTTAGCACTTCCTCGAACAGGCCTGCCTGTTCTTATAATTCAATTGGCCAAGGTCAATATGTACAAAGGTGAAGTAGGGATCCAAAATGTTTTCAATGCCTCCAAAAATGGATTAGCTGTGCACGAAGTAGAAACAGAGGTGGAGATTAGAACCATATCTGAAAGGAGCAGGCCTGTCTCATTGACAGATGAATTTCTGAAATTGTATCCCAGAAAGTATCTGTCACAGCTGCAACAGAATGCGGAGGTGACTGGACTTCCCATTCTGCTTTTCAATTTTTTCGAAATTTTTTTTTGGTTCAAGCTTAAAATTGAGGTTTCTGATGCTACAGATAGTGCTCAGCTCATTTTATTTGACTCTGAATGTTATGCTATGCTTCACAAGTCTTGTCGTGAGATCTTGGCTGATATGAAGTTGAAGTTTTCCCCAATGTTTTCAAAGATTGAGGGAGGAGACACTAAGAATTGTGTGATGGAATTATCCCCTCAATGTAATTCTGCAATTACTGAGATAGATGTGAGCCCACTTTCTTGTGTTCCATCCCCCTCTATGGTGGAGGATGGTGAGAATGCTTCTAAGAGGGACCCTGATCAATCTGTTGATGGAATCAGTGAGAGGAAAAAGCGACCCAAGCAGAGAGTGGTGATGATTGAGAAGAATTGGCAAGGGCTATTTGCTAGAATAGATATTCACGAGGGTCATTCACAATGGGAGGATGTAATGTTCGGCTATGGTGGAGGACAATACTTCGATGTTGATCACAGACCTGAAGATGTGATTGTGCACATTAAGTGTTCCGAGGGTGTGAAGATTCAAGCATCTATTAGTAGGGACCTTCTGAAATTAAAGAAGCTGGATCTGGAGGAAGGAGGGTTTTACTTTGTCAGTAGTGTGTTGGTTGTACCGAATGATGGAAATGATAGAACCACAAGGCATGGTTTCCGGTTGGTGGTTGATAAGAGGAGCAAAATTATAAAGGCTGAGCGCCTAACTTATATCCAGTTTGGACTCTCTCCTTTAACTTGCAGTGACTTAGTGAGGACCAAAAAAGAAACTCAGTTCCTTGTGGACAAGGTTGGATTATTGACGGCTATATCTTGCGAAAGAGCGTACACCAAAGATGACAAAGATATCCTGGCTTTGTACTTGGAAATAACTGATCCCACGGGGAAAGTTGAGTGTGTTGTGTATGATGATTATGTGGAAGTTGTGGTTGAATTCCTTCGGAAGCATGGCCCTGCACTCCTATTATCGTCGTTCAGTATGCCAGGATGGTTCCTGATGCACAAGTCCTTTTCGTACAGAAACATGGATATGCCATGTCTCAACCTAAGAGATGAGTTCCTTTATTTCTACCACAAGAAAGACATAGGTGGACTAAACAAACAAGGAAAGGGTGGCTGCTTTGTCATCTGTGCAACCATCACTAGCTTCGTGGAGAATGAGGCTTGGTGGTATTCTGCATGTAGGCCCCATGCTTGCAGCTCTATGGGAAGCTCACTTTATACATGTGACGACAACTTTTCAGTTATCCCTAGGTTTTCGGTCAAAGTTGAGGTCTTTGATGGAAAAGAATTAACTTACCTACAGATAGGTAACGAAGACATTGAGCTGCTTCTGAATGTCTCTTGCACAGATCTATTGTTAACACTAGAGCCCATATACAAAATTGTTGCTCTGTTAGGTGAGCGTAGAATGGAACCACAACGCAATACTAATGAAGGTAGCTCTTATGCAAGTGCTATGCATGCAGACAATTTCACCTCACATGGATCTGCCAAATTTAACTCTTCCTCAGCTGGAAGTGCCTCGGTTAACATGAGGACCAAGGATACATCCTTTCTTCAGCTACTGGAGCCACCTATTGACAAGGAGTGTGTTCATTTCACAAGAAGTACCCAGTAG 2484 0.4263 MAMVYGLFHPIKSVCGLRQNGRLRVKVVRVWNMSYVAKPNDPYARQMVFIDEEGGRIEATIPKQHMNKFAHVLVEGQIYKITNFGLLRNTGKFRATDHEFKVTFNATTKVIPCPTMSIPTSGYALMKTEDIKRTKGKSDYLLDFMGMVSAVSEEITLSKEGRRTRMMLIDLVDEMGEIRLALFGDMIDVVAGFLALPRTGLPVLIIQLAKVNMYKGEVGIQNVFNASKNGLAVHEVETEVEIRTISERSRPVSLTDEFLKLYPRKYLSQLQQNAEVTGLPILLFNFFEIFFWFKLKIEVSDATDSAQLILFDSECYAMLHKSCREILADMKLKFSPMFSKIEGGDTKNCVMELSPQCNSAITEIDVSPLSCVPSPSMVEDGENASKRDPDQSVDGISERKKRPKQRVVMIEKNWQGLFARIDIHEGHSQWEDVMFGYGGGQYFDVDHRPEDVIVHIKCSEGVKIQASISRDLLKLKKLDLEEGGFYFVSSVLVVPNDGNDRTTRHGFRLVVDKRSKIIKAERLTYIQFGLSPLTCSDLVRTKKETQFLVDKVGLLTAISCERAYTKDDKDILALYLEITDPTGKVECVVYDDYVEVVVEFLRKHGPALLLSSFSMPGWFLMHKSFSYRNMDMPCLNLRDEFLYFYHKKDIGGLNKQGKGGCFVICATITSFVENEAWWYSACRPHACSSMGSSLYTCDDNFSVIPRFSVKVEVFDGKELTYLQIGNEDIELLLNVSCTDLLLTLEPIYKIVALLGERRMEPQRNTNEGSSYASAMHADNFTSHGSAKFNSSSAGSASVNMRTKDTSFLQLLEPPIDKECVHFTRSTQ. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02290 827 Gene3D - 645 811 IPR012340 -
Seca12g02290 827 Gene3D - 284 363 IPR012340 -
Seca12g02290 827 MobiDBLite consensus disorder prediction 377 402 - -
Seca12g02290 827 Gene3D - 117 238 IPR012340 -
Seca12g02290 827 MobiDBLite consensus disorder prediction 381 402 - -
Seca12g02290 827 SUPERFAMILY Nucleic acid-binding proteins 654 741 IPR012340 -
Seca12g02290 827 Gene3D - 7 113 IPR012340 -
Seca12g02290 827 Pfam Domain of unknown function DUF223 47 131 IPR003871 -
Seca12g02290 827 SUPERFAMILY Nucleic acid-binding proteins 123 225 IPR012340 -
Seca12g02290 827 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Seca12g02290 827 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02290 Seca-Chr12 31434346 31446427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02290 21 217 Core DNA Replication Machinery Family AT2G06510 25.604 1.00e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02290 - - lja:Lj6g3v0884310.1 230.72