Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02286 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGTTGCAGCGAGTCATGTGTTTTGCGCCCTTGTTTGCAATGGATCGATAGCCCTGAAGCCCAAGGCCATGCCACTGTCTTCGTAGCCAAATTCTTTGGTCGCGCAGGCCTCATGTCCTTCATTTCCAACGTCCCTGAAACCCAAAGACCTGCTCTATTTCAGTCTCTGCTTTTCGAAGCATGCGGAAGAACGGTGAACCCTGTGAACGGCGCCGTGGGGCTTCTCTGGACCGGTAACTGGCACGTGTGCCAGGCAGCGGTGGAGACTGTGCTCCGCGGCGGCACGCTCAGGCCCTTGCCGGAGCTTACCGGCCTGGACGCTCCTTCCGCGGCCACCGATGAAGCATCGGAAGTGGAAGTAGCCTGCACGGACATTTGGACGATCCGAGATCCGAATCCAAATTGCCAGCTCACAACCTCGCGATCTAATAATAATAGGATCTCTCCCGGCGGAAAACGCAAGCGGTCGGAGGCGGTGACGGCGATCAATCTCGATCTCCGTCTGACGCCGATTTTCCTGCAGAAAGTGTCGGAGAACCGCCGGCCGGGTTCGCCGTCGATGACTTCGGAGGAATCCGTCACGACGAACACGTGCCTCGGAGATCAGTGGACTCACGGCGGAGACCGGAAAGTTCTCAACCTTTTCATCTGA 684 0.5746 MSCNGCRVLRKGCSESCVLRPCLQWIDSPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPELTGLDAPSAATDEASEVEVACTDIWTIRDPNPNCQLTTSRSNNNRISPGGKRKRSEAVTAINLDLRLTPIFLQKVSENRRPGSPSMTSEESVTTNTCLGDQWTHGGDRKVLNLFI. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02286 227 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Seca12g02286 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 213 - -
Seca12g02286 227 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02286 Seca-Chr12 31362217 31363941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02286 1 226 AS2 family AT3G49940 58.800 3.17e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g02286 LOB 4.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02286 - - gmx:100816480 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02286 12 31362217 31363941 Seca12g02286 12 31362217 31363941 ECH
Seca12g02286 12 31362217 31363941 Seca12g02286 12 31362217 31363941 PCT