Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02283 ATGGCCATAAGGCCCTTCCAATTCAACTTCTCGCGCGATAGATTGCTCTTTCTATTCCGCACTGCTCAATCTTCTCATTCTCATTCCTTTCTCCGCTCTTGTCAAACTATTGCCCCCTCTTTCTCCTTCCGCCACTTCGCTGTCTCCGCCCCAGCTCCGTCGCACCTACTCGACCGCATCCGCAGCCTCAGCCGCCCGCCGCCGCCGGACACCATGGCGCAGAAGATTGGAAAATCAACGCGCCGCCCTGGCGCTTCCTCCAAGGCGAGGGTTTATGTCGACGTCAACGTTGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCACCGTCCAGTGGGGGGAACAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGTGTTCACTGCACTGATAATGAAAAATGTATCATCAAAATCCTGAAACCCGTAAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCGAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTTTATCCTACATTGTCAGATTATGACATACGATATTATATCTATGAACTTCTAAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGTCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCGCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAGATAGCTAAGGTAAGTGGAGCCTGTGAAGTGTACTTGGTGGCATTTGTGCTAGATTGTTGGTTTTTGTGTGTACTTGGGACAGATGAGTTAAGTGCATATTTGAGTAAGTATCGAATAGAGTTGGACCCACATCTTGCGGCACTTGTTGGAAGGCATAACCGGAAGCCATGGGTAAAGTTCATTAATGTAGAGAATCAGCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTAAGATATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCCCATCCTTACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTACACATTGA 1317 0.4472 MAIRPFQFNFSRDRLLFLFRTAQSSHSHSFLRSCQTIAPSFSFRHFAVSAPAPSHLLDRIRSLSRPPPPDTMAQKIGKSTRRPGASSKARVYVDVNVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVSGACEVYLVAFVLDCWFLCVLGTDELSAYLSKYRIELDPHLAALVGRHNRKPWVKFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRTH. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02283 438 ProSiteProfiles Protein kinase domain profile. 119 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02283 438 Gene3D Phosphorylase Kinase; domain 1 119 195 - -
Seca12g02283 438 Pfam Protein kinase domain 119 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02283 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Seca12g02283 438 PANTHER CASEIN KINASE II SUBUNIT ALPHA 80 434 IPR045216 GO:0004674|GO:0006468
Seca12g02283 438 SMART serkin_6 119 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02283 438 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Seca12g02283 438 FunFam Casein kinase II subunit alpha 196 342 - -
Seca12g02283 438 MobiDBLite consensus disorder prediction 61 85 - -
Seca12g02283 438 CDD STKc_CK2_alpha 100 424 IPR045216 GO:0004674|GO:0006468
Seca12g02283 438 SUPERFAMILY Protein kinase-like (PK-like) 90 428 IPR011009 -
Seca12g02283 438 Gene3D Transferase(Phosphotransferase) domain 1 196 424 - -
Seca12g02283 438 FunFam Casein kinase II subunit alpha 105 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02283 Seca-Chr12 31225557 31233804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02283 117 425 Core Cell Cycle Gene Families AT3G48750 30.938 9.35e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca12g02283 Pkinase 3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02283 K03097 - gmx:100776388 692.96