Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02282 ATGGGAGACGAAACTAGTGCTGCGGTGGTTGTGACTGTGAGAGAGTTCGACCCAAATAAAGACAGAGAAAGAGTGGAAGCCGTTGAAAGAATATGTGAGGTTGGACCCAGTGGAAAGCTTTCCCTCTTCACCGACCTGCACGGTGACCCAATTTGCAGGGTCCGCAACTCACCAACTTTCCTCATGCTGGTGGCTGAGATAGGTGAAGAGACAGTGGGTATGATAAGGGGTTGCATCAAAACGGTTACATGCGGAAAGAAGCACTATAGACATGGAAAAAACACCACCTCTAACAACCACACTGAACCAACAACCGAAACAACCGTTCAAGTCAGTTCCAAACAAGTCCCTGTTTATACCAAACTCGCCTATATACTAGGCCTTCGTGTTTGCCCATTTCACAGGAGAATGGGAATAGGATTGAAACTTGTGCAGAGATTGGAGGAGTGGTTTAGGGAGAATGGAGCTGAGTATTCATACATGGCAACGGAAAAAGATAACGTAGCTTCAGTTAAGCTTTTCACCGAAAAATGCGGGTACTCCAAGTTCCGTACTCCTTCAATACTAGTGAATCCGGTTTTTGCTCACAAAGTTAATACCTCAGCGAAAAAGGTCACAATCATCAAACTCACTCCAAACGACGCCGAATCGCTTTACCGCAACCGATTCGCCACCACCGAGTTTTTCCCTCGCGACATTGACTCTGTTCTTAGCAACAAGCTCACCCTCGGCACCTTCCTCGCCGTACCTCGCGGTTCATACTGTGCCGACACGTGGCCCGGTTCGGACAGGTTTCTGTCGGACCCACCTGCTTCTTGGGCCTTGGTCAGCGTTTGGAACAGTAAGGACGTTTTCACTCTCGAGGTAAAGGGCGCGTCGCGCGTGAGGCGGGCTTTAGCGAAGGCTACCCGGGTTATGGACCGGGCCTTTCCTTGGCTTCGGTTGCCTTCTATTCCGAATTTCTTTGAGCCGTTCGGGTTTCACTTAATGTACGGGCTTGGAGGGGAAGGCCCAGACGCTTTGAGGATGGTGAGGGCTTTGAGTGGGTTCGCGCATAACTTAGCTAAGGAATATGGGTGCGGTGCGGTGGCTACGGAGGTTTCGAGTACCGAACCGCTCAGGTTCGGTGTCCCATACTGGAAGAGGCTGTCTTGTGAGGAGGATCTGTGGTGCATGAAGAGGCTCGGAGAAGATTACAGTGATGGCTCTGTTGGTGATTGGACCAAATCTCCACCTGGATTATCCATTTTTGTTGATCCAAGAGAGTTTTAA 1272 0.5 MGDETSAAVVVTVREFDPNKDRERVEAVERICEVGPSGKLSLFTDLHGDPICRVRNSPTFLMLVAEIGEETVGMIRGCIKTVTCGKKHYRHGKNTTSNNHTEPTTETTVQVSSKQVPVYTKLAYILGLRVCPFHRRMGIGLKLVQRLEEWFRENGAEYSYMATEKDNVASVKLFTEKCGYSKFRTPSILVNPVFAHKVNTSAKKVTIIKLTPNDAESLYRNRFATTEFFPRDIDSVLSNKLTLGTFLAVPRGSYCADTWPGSDRFLSDPPASWALVSVWNSKDVFTLEVKGASRVRRALAKATRVMDRAFPWLRLPSIPNFFEPFGFHLMYGLGGEGPDALRMVRALSGFAHNLAKEYGCGAVATEVSSTEPLRFGVPYWKRLSCEEDLWCMKRLGEDYSDGSVGDWTKSPPGLSIFVDPREF. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02282 423 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 10 423 - -
Seca12g02282 423 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 43 183 IPR016181 -
Seca12g02282 423 Pfam Acetyltransferase (GNAT) family 57 180 IPR000182 GO:0016747
Seca12g02282 423 FunFam Probable N-acetyltransferase HLS1-like 20 187 - -
Seca12g02282 423 Gene3D - 48 186 - -
Seca12g02282 423 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 11 199 IPR000182 GO:0016747
Seca12g02282 423 CDD NAT_SF 111 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02282 Seca-Chr12 31186755 31188887 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca12g02282 Acetyltransf_1 2.2e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02282 - - gmx:100804109 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02282 12 31186755 31188887 Seca12g02282 12 31186755 31188887 ECH