Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02280 ATGAAAGCTTATCATCATTTCAGCTTCTTTTTAATCCTATCATTGTCTCTCTTCACTGCAAAAGGGGTCAACACCACAATTGAATTCAATGAATCCCACACAAGAAGGCTCCTCCACCAGCCCTTGTTTCCGGTTGGTTCCGCTCCACCGCCGGTAACTCCTCCGCCACCGCCGGCAACCCCTTCATCCCCCGACATTCCTTTCTTCAACGAGTATCCATCAGGGCCGCCGCCACCAGAGCAGAGCCAGCCACCGCCATCAGCCACAATCGCTAACCCGACGGCGACGAAACCCACTAAGCCGACGAAGAATGTGGCAATTGCGGTGTCCGTCGCATTTGCGACGCTTGCAATGTTCTCAGCACTCGCGTTCTTCCTGTACAAACACAGAACTAAGCAGAATTCTGCCACAGGGACACAAAAACTCGTCGGTGGTGGGAATTCTTCTCGGAGGAGAGTTCTAGAAGATTCTCAAAGGGCCCCACCTCCACCTTCAAGCTTCCTCTATATTGGGACTGTGGAGCCCACAAGAACGTCGGTGAGCGAACCAAATCACTCACCTTATCGTAAGCTCAATTCCGTTAAGCTAAGTTCCGATCATCTTTACCGGCCAAGCCCTGAGTTGCAGCCGTTGCCGCCGCTCAGCAGGCCCCCCGACGAGATCCACTCGACGCCGGCGGCGTCATCGTCGTCTTCCTCCGACGAGGAAAGCCGAGAAACGGCGTTTCATTCGCCGCATGGCTCGTCGCTCAGCCACGATGACAGTTATTACACGCCGGTTTCGCGTCACAGTTCTCTGGCTAACGGTAGCCCCGCCGTGCCGGCCGCCGTCGCGGTGGTTCCTTTCTCGAAGAGAACCTCGCCGAAATCTAGGTTTTCTGGTCCGTCGCCGGATGTAAGGCCAGCCATCATTCCCTCTATAAAGAATTATGCTCTGCCGCCGCAGGCGGCGGCGGACGGCGGTGCCTCCAGAAGGCCGAAATTTTCATCGCCTCCCCCAGCACCGAATTTGAAGAGTCTTCATTCAAACGTGTCCAGAGCTCCACCTCCGCCGCCGCCGCCACCTCCGCCGAGAAAGGATTGGTCTCCGGCGATTAGGGTATCGTCTTCCTCTGTGTCAAGAAATCAGAAACAGCAACAGTCTTTTTCTCCAAGTGAAGGAGCAGCTTCTGTTAACAGTGTGAGTGTCAGCAAAGGTTCAGAGGAAGGTGATGAAATGGATGGAGGGAAACCCAAGTTGAAGGCTCTGCATTGGGATAAAGTGCGTGCTACCTCAGACCGTGCCACTGTGTGGGACCAGTTAAAATCAAGCTCCTTTCAGTTGAATGAGGACATGATGGAGACCCTGTTTGGCTGCAATTCTGCAAATTCTGCCCCTAAAGAGACAACTGTTACTAGAAAACCTGTTTTCCCTCCAGTTGAACAGGAGAATAGGGTGTTAGATCCCAAGAAATCACAAAACATAGCTATACTACTCAGGGCACTGAATGTGACAAGAGATGAGGTGTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGTGCTGAGCTATTGGAAACTCTGGTAAAGATGGCTCCAACAAAGGAGGAAGAGATAAAACTAAAAAATTATGATGGTGACCTTTCAAAACTTGGGCCTGCAGAAAGATTTCTTAAATCAGTGCTTGATATTCCTTTAGCTTTTAAAAGAGTTGAAGCCATGCTGTATAGAGCTAATTTTGAAGCAGAAGTTAACTACCTCAGGAAATCCTTTCAGACCTTGGAGGCAGCAAGTGAGGAATTAAAGAACAGTAGGTTATTCCTCAAACTCCTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGATGGCACCAATCGTGGTGATGCTAAATCATTCAAACTGGAGACACTCCTGAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGTATAGGAGGTGATTCTACAAATGAGAGTGTCCAAAATCAAACAAATTCTCAATTCAATGAGGATGAATTCAGAAAGAAAGGACTGCAGGTTGTGGCTGGACTGAGTCGAGACCTTGGTAATGTCAAAAAGGCAGCAGGAATGGATTCAGATGTCTTAAGCAACTATGTCTCAAAGCTTGAAATGGGGCTTGATAAAGTGAGATTGGTTTTGCAATATGAAAAGCCAGATATGCAAGGAAACTTCTTTAACTCTACAAAGCTATTTCTAAAAGAAGCTGAAGAGAAGATTATTGGGATCAAGGCTGATGAGAGAAGGGCCTTATTCCTTGTGAAAGATGTTACAGAATACTTTCATGGGGATACAGCTAAGGAAGAAGCACACCCTTTCAGAATTTTCATGATTGTAAGAGACTTTCTAAATATTTTGGATCAAGTCTGCAAAGAAGTGGGAAGGATGCAGGATAGAACAGTGATTGGTTCAACCAGATCCTTCAGAATAGCAGCAAGTGCATCCTTACCTGTCCTCAACAGGTACCATGCAAGACAAAATAGAAGTTCAGATGAGGAAAGCTTATCCCCATAG 2562 0.4766 MKAYHHFSFFLILSLSLFTAKGVNTTIEFNESHTRRLLHQPLFPVGSAPPPVTPPPPPATPSSPDIPFFNEYPSGPPPPEQSQPPPSATIANPTATKPTKPTKNVAIAVSVAFATLAMFSALAFFLYKHRTKQNSATGTQKLVGGGNSSRRRVLEDSQRAPPPPSSFLYIGTVEPTRTSVSEPNHSPYRKLNSVKLSSDHLYRPSPELQPLPPLSRPPDEIHSTPAASSSSSSDEESRETAFHSPHGSSLSHDDSYYTPVSRHSSLANGSPAVPAAVAVVPFSKRTSPKSRFSGPSPDVRPAIIPSIKNYALPPQAAADGGASRRPKFSSPPPAPNLKSLHSNVSRAPPPPPPPPPPRKDWSPAIRVSSSSVSRNQKQQQSFSPSEGAASVNSVSVSKGSEEGDEMDGGKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGCNSANSAPKETTVTRKPVFPPVEQENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGPAERFLKSVLDIPLAFKRVEAMLYRANFEAEVNYLRKSFQTLEAASEELKNSRLFLKLLEAVLRTGNRMNDGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGIGGDSTNESVQNQTNSQFNEDEFRKKGLQVVAGLSRDLGNVKKAAGMDSDVLSNYVSKLEMGLDKVRLVLQYEKPDMQGNFFNSTKLFLKEAEEKIIGIKADERRALFLVKDVTEYFHGDTAKEEAHPFRIFMIVRDFLNILDQVCKEVGRMQDRTVIGSTRSFRIAASASLPVLNRYHARQNRSSDEESLSP. 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02280 853 Pfam Formin Homology 2 Domain 409 802 IPR015425 -
Seca12g02280 853 MobiDBLite consensus disorder prediction 44 86 - -
Seca12g02280 853 SMART it6_source 403 817 IPR015425 -
Seca12g02280 853 MobiDBLite consensus disorder prediction 243 268 - -
Seca12g02280 853 ProSiteProfiles Formin homology-2 (FH2) domain profile. 403 828 IPR015425 -
Seca12g02280 853 Gene3D Formin, FH2 domain 408 814 IPR042201 -
Seca12g02280 853 MobiDBLite consensus disorder prediction 345 361 - -
Seca12g02280 853 MobiDBLite consensus disorder prediction 200 413 - -
Seca12g02280 853 MobiDBLite consensus disorder prediction 364 399 - -
Seca12g02280 853 SUPERFAMILY Formin homology 2 domain (FH2 domain) 348 814 - -
Seca12g02280 853 MobiDBLite consensus disorder prediction 41 100 - -
Seca12g02280 853 PANTHER FORMIN-RELATED 8 847 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca12g02280 853 MobiDBLite consensus disorder prediction 133 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02280 Seca-Chr12 31097471 31101943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02280 362 843 FH2 protein (formin) Gene Family AT5G67470 70.370 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02280 - - gmx:100803578 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02280 12 31097471 31101943 Seca12g02280 12 31097471 31101943 ECH
Seca12g02280 12 31097471 31101943 Seca12g02280 12 31097471 31101943 PCT