Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02276 ATGGAGAGTTATTTAAATGAGAATTTCGGAGGGGTGAAGTCCAAGAACACTACCGAAGAGGCTCTTGAAAAATGGAGGAAACTATGCGGAGTTGTAAAAAACCCCAAAAGACGCTTTCGTTTCACTGCTAACCTCTCTAAACGCGGCGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTCATCCAAGTTGTTGTTATACCTGCAGGTGTTCAACCAAGCGATTACGTTGTACCTGACGATGTTAAAGCAGCAGGTTTCCAAATTTGTGCTGATGAATTGGGGTCTATTGTTGAAGGCCACGATGTAAAGAAGCTCAAGTTTCATGGTGGAGTTAGTGGTATTGCAGAAAAGCTTTCCACATCAACCACTAAGGGGCTTAGTGGTGATTCTGATGCGCGGCATAAGAGACAAGAGATTTTTGGAGTCAATAAATTTGCTGAAAGTGAAGTTCGGAGTTTTTGGGTTTTTGTTTATGAAGCCCTTCAAGACATGACCCTCATGATACTTGGTGTGTGTGCAGTTGTGTCTCTGATAGTTGGCGTAGCAACAGAAGGATGGCCCAAAGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTATTGGTTGTCTTTGTAACAGCAACAAGTGATTACCGCCAATCATTACAATTCAAGGATTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTAACTAGAAATGGTTATAGGCAGAAAATGTCAATCTATCATTTACTTCCCGGTGATCTTGTGCATCTTTCCATTGGAGACCAAGTCCCTGCAGATGGGTTATTTGTTTCTGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTAACTTCCCAAAATCCATTTCTTCTCTCTGGAACCAAGGTCCAAGATGGATCATGCACAATGTTGGTTGCCACTGTTGGGATGAGAACTCAATGGGGTAAGTTAATGGCAACTCTAAGTGAAGGTGGAGATGATGAAACCCCATTACAGGTGAAACTGAATGGGGTGGCAACCATTATTGGGAAGATAGGACTGTTCTTTGCAGTGGTTACTTTTGCAGTTTTGGTGAAAGGCCTCATGAGCCGGAAACTCAAAGAAGGAAGGTTCTGGTGGTGGTCAGGGGATGATGCCATGGAGATGTTGGAATTCTTTGCTATTGCAGTTACCATTGTTGTTGTTGCTGTTCCAGAGGGGCTACCATTAGCTGTGACATTGAGTCTTGCATTTGCAATGAAGAAAATGATGAATGACAAAGCTCTGGTGAGGCATTTGGCAGCTTGTGAGACTATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGTACATTAACAACTAACCGCATGACTGTAGTGAAAACATGCATTTGTATGAATAGTAAGGAAGTAAGCAATAATGATTCTAGTTTGTGCTCTGAACTCCCAGATAAAGCAGTGAAACTTTTGCTGCAGTCAATATTTAATAATACTGGAGGAGAGGTTGTGGTTAACAGAAAAGGCAAACGTGAGATCTTGGGGACACCAACAGAGTCAGCAATATTGGAGTTTGGGTTATCACTAGGTGGAGATTTTCAGGCAGAGAAACAAGCATGCAAACTTATTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTAGTTGTGGAGCTCCCTGGAGGAGGTTTACGAGCCCATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAGGTGATTGACTCAAAAGGTGATGTTGTCTCTCTTGATGAAGAATCAAGTAACCATCTTAATAGCACAATTAACCAGTTTGCTAGTGAGGCACTTAGAACTCTTTGCCTTGCCTATATGGAATTGGAAAACGGGTTCTCTGCTGAAGACTCTATTCCAGCTTCTGGGTACACTTGTATAGGAATTGTTGGTATAAAAGATCCTGTTCGTCCCGGTGTTAAGGAGTCTGTTGCAGTTTGCCGTTCAGCTGGAATAATGGTAAGAATGGTTACAGGAGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGAATTTTAACAGAGGATGGCATAGCCATTGAAGGTCCAGACTTTAGAGAGAAGACTCAGGAGGAATTGTTTGAACTTATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTGAAACACCTCCGTACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCAGACATCGGACTTGCAATGGGAATTGCTGGAACGGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCTGTTTACATCAATATTCAGAAATTTGTACAGTTCCAGCTGACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCCTGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGTTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATTTAATGAAACGTGTACCAGTGGGGAGAAAGGGAGAATTCATCAACAACGTCATGTGGAGGAATATCTTAGGACAAGCATTATACCAGTTTGTGGTGATATGGTTTCTTCAGTCAGTAGGAAAGTGGGTCTTTTTTCTCAGAGGCCCAAATGCTGATATAGTCTTAAACACACTTATCTTCAACTCATTTGTCTTCTGTCAGGTTTTCAATGAGGTAAACTCTCGTGAGATGGAGGAAATAGATGTTTTTAAGGGCATATGGGATAATCATGTGTTTGTGGCTGTCCTGGGTTGCACTGTTGTCTTTCAAATCATAATAGTTGAGTACTTTGGAACCTTTGCAAACACAACACCTCTCAGTCTGGTACAGTGGATCTTTTGCTTGTCGGTTGGATATGTGGGCATGCCAATAGCAACTTACTTAAAGCAGATCCCTGTCTGA 3063 0.4228 MESYLNENFGGVKSKNTTEEALEKWRKLCGVVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQVVVIPAGVQPSDYVVPDDVKAAGFQICADELGSIVEGHDVKKLKFHGGVSGIAEKLSTSTTKGLSGDSDARHKRQEIFGVNKFAESEVRSFWVFVYEALQDMTLMILGVCAVVSLIVGVATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYHLLPGDLVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVATVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKLKEGRFWWWSGDDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVSNNDSSLCSELPDKAVKLLLQSIFNNTGGEVVVNRKGKREILGTPTESAILEFGLSLGGDFQAEKQACKLIKVEPFNSEKKRMGVVVELPGGGLRAHCKGASEIILAACDKVIDSKGDVVSLDEESSNHLNSTINQFASEALRTLCLAYMELENGFSAEDSIPASGYTCIGIVGIKDPVRPGVKESVAVCRSAGIMVRMVTGDNINTAKAIARECGILTEDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRVPVGRKGEFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPNADIVLNTLIFNSFVFCQVFNEVNSREMEEIDVFKGIWDNHVFVAVLGCTVVFQIIIVEYFGTFANTTPLSLVQWIFCLSVGYVGMPIATYLKQIPV. 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02276 1020 SFLD p-type atpase 441 811 IPR044492 -
Seca12g02276 1020 SUPERFAMILY HAD-like 457 864 IPR036412 -
Seca12g02276 1020 Gene3D - 469 663 IPR023299 GO:0000166
Seca12g02276 1020 FunFam Calcium-transporting ATPase 17 77 - -
Seca12g02276 1020 FunFam Calcium-transporting ATPase 652 804 - -
Seca12g02276 1020 Gene3D - 456 804 IPR023214 -
Seca12g02276 1020 Pfam Cation transport ATPase (P-type) 519 597 - -
Seca12g02276 1020 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 465 668 IPR023299 GO:0000166
Seca12g02276 1020 FunFam Calcium-transporting ATPase 222 342 - -
Seca12g02276 1020 NCBIfam calcium-translocating P-type ATPase, PMCA-type 116 1020 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca12g02276 1020 FunFam Calcium-transporting ATPase 469 663 - -
Seca12g02276 1020 PANTHER CATION TRANSPORTING ATPASE 66 1019 - -
Seca12g02276 1020 Gene3D - 145 342 - -
Seca12g02276 1020 Gene3D - 174 1016 - -
Seca12g02276 1020 PRINTS H+-transporting ATPase (proton pump) signature 759 775 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02276 1020 PRINTS H+-transporting ATPase (proton pump) signature 615 633 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02276 1020 PRINTS H+-transporting ATPase (proton pump) signature 791 816 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02276 1020 PRINTS P-type cation-transporting ATPase superfamily signature 759 778 - -
Seca12g02276 1020 PRINTS P-type cation-transporting ATPase superfamily signature 678 688 - -
Seca12g02276 1020 PRINTS P-type cation-transporting ATPase superfamily signature 290 304 - -
Seca12g02276 1020 PRINTS P-type cation-transporting ATPase superfamily signature 656 667 - -
Seca12g02276 1020 PRINTS P-type cation-transporting ATPase superfamily signature 783 795 - -
Seca12g02276 1020 PRINTS P-type cation-transporting ATPase superfamily signature 459 473 - -
Seca12g02276 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 123 1019 IPR023298 -
Seca12g02276 1020 FunFam Calcium-transporting ATPase 776 1020 - -
Seca12g02276 1020 Pfam Cation transporter/ATPase, N-terminus 123 191 IPR004014 -
Seca12g02276 1020 SUPERFAMILY Calcium ATPase, transduction domain A 245 339 IPR008250 -
Seca12g02276 1020 Gene3D - 18 78 - -
Seca12g02276 1020 Pfam Cation transporting ATPase, C-terminus 844 1016 IPR006068 -
Seca12g02276 1020 NCBIfam HAD-IC family P-type ATPase 550 704 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02276 1020 NCBIfam HAD-IC family P-type ATPase 394 494 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02276 1020 NCBIfam HAD-IC family P-type ATPase 730 843 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g02276 1020 CDD P-type_ATPase_Ca_PMCA-like 150 892 - -
Seca12g02276 1020 Pfam E1-E2 ATPase 243 437 - -
Seca12g02276 1020 SFLD C1.7: P-type atpase like 441 811 - -
Seca12g02276 1020 SMART Cation_ATPase_N_a_2 122 196 IPR004014 -
Seca12g02276 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 461 467 IPR018303 -
Seca12g02276 1020 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02276 Seca-Chr12 31058261 31063931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02276 1 1020 Primary Pumps ATPases AT4G37640 81.587 0.0 1708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02276 K01537 - gmx:100776926 1852.03