Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02268 ATGGATACCCTGTTTAGGCTAGTCAATTTTCAACCTCAACAACCCGATCCATCCCTCAACTCCACCACCACCATAACAACTTCCAGCAGCTCTAGATCCTCTCAACAAAACTATCATCATTACTACCACCAACAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTATCCTCTTCTTCTTCTAAACACTACTACCCTAATTACCAACCCCACCACCATGTATCCTCCACCACTCTCACTCCTAACACCACCACAATCACTAGCACCCCAACCACCGGTTACTCCTTCTCCCCAACCTACCCTGACTTCTTCAACAACCTCGATTTCTCCGGCACGTGGGCGCCCAACCTCCTCATCGAAACCGCACGTGCCATCGCTGACAAGGACAGCAACCGAGTTCAACAACTCATGTGGATGTTAAACGAACTAAGCTCACCGTACGGTGACACCGATCAAAAACTCGCTTCGTATTTCCTTCAAGCCTTATTCAGCCGTATGACCGATGCAGGTGATCGAACTTACCGAACCTTATCTTTCGCATCGGAGAAAACTTGCTCCTTTGAATCAACAAGGAAGATGCTGTTGAAGTTCCAAGAGGTTAGCCCTTGGACGACGTTCGGACACGTGGCTTCTAATGGCGCGATCTTAGAAGCCTTAGAAGGTAACCCTAAGCTTCACATAGTTGACATAAGCAACACTTATTGCACTCAATGGCCTACGCTTTTAGAAGCACTCGCAACTCGCAGTGACGAAACGCCTCATCTTCGTTTAACCACCGTTATAACCGGTGGTGTTTCTGTTCAAAAGGTGATGAAGGAAATAGGGACGAGGATGGAGAAATTCGCGAGGCTTATGGGAGTGCCGTTTAAGTTCAACGTTATCCATCACGCTGGTGATCTCTCTAACTTGAATTTATCTGAGTTGGAAGTTAACGATGACGAGGCTCTGGCGGTTAACTGCGTTAACTCGTTGCATTCCGTAACGGCTAACGGAAATAACCGTGACGCGTTGATTTCGTTGCTTCGGGGATTGCAGCCTAGGGTTTTGACGGTGGTGGAAGAGGAAGCGGATTTTGATTTCGGTTTGGAGTTTGTTAGAGGGTTTGAAGAGTGTGTGAGGTGGTTTAGGGTTTACTTTGAGGCGTTGAATGAGAGCTTTGTGAGGACGAGTAGTGAGAGGTTGATGCTGGAAAGGGCGGCGGGGAGGGCGATTGTGGATTTGGTGGCTTGTGATGCGGCGGAGTCGGTGGAGAGGAGGGAGACGGCGGCGCGGTGGACGAGGCGGATGCATGGAGCGGGATTTGAAACGGTGGCGTTTAGTGAGGAGGTTAGTGATGACGTGAGGGCGCTGTTGAGGAGGTACAGGGAAGGGTGGTCGATGGTACAGTGTTGTGACGCCGGAATATTCTTGACGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1470 0.4966 MDTLFRLVNFQPQQPDPSLNSTTTITTSSSSRSSQQNYHHYYHQQEDEECFNFYMDEEDLSSSSSKHYYPNYQPHHHVSSTTLTPNTTTITSTPTTGYSFSPTYPDFFNNLDFSGTWAPNLLIETARAIADKDSNRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRMTDAGDRTYRTLSFASEKTCSFESTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIVDISNTYCTQWPTLLEALATRSDETPHLRLTTVITGGVSVQKVMKEIGTRMEKFARLMGVPFKFNVIHHAGDLSNLNLSELEVNDDEALAVNCVNSLHSVTANGNNRDALISLLRGLQPRVLTVVEEEADFDFGLEFVRGFEECVRWFRVYFEALNESFVRTSSERLMLERAAGRAIVDLVACDAAESVERRETAARWTRRMHGAGFETVAFSEEVSDDVRALLRRYREGWSMVQCCDAGIFLTWKDQPVVWASAWRP. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02268 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 481 IPR005202 -
Seca12g02268 489 Pfam GRAS domain family 120 488 IPR005202 -
Seca12g02268 489 ProSiteProfiles GRAS family profile. 109 488 IPR005202 -
Seca12g02268 489 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02268 Seca-Chr12 30851328 30852797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02268 1 489 GRAS Transcription Factor Family AT4G37650 59.176 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g02268 GRAS 1.3e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02268 - - gmx:100778524 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02268 12 30851328 30852797 Seca12g02268 12 30851328 30852797 ECH
Seca12g02268 12 30851328 30852797 Seca12g02268 12 30851328 30852797 PCT