Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02262 ATGTTTCTCAATGATGGCAGGTTGGGGGATAATCATATATTAGAGGCTGTTGTTAGTATGAAGGAGCCAAAAGGTTCTGACAGGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCGGTGTCCACCAAACCTCAGAAAGTTACTATCATCAAAACTGAAGCTTATGGTGGAAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGAATTACGCCAAGTTCAACAGTCACTGAGAAAAGAAGATGCTCTTCCTTGATACATGTGGAAGGGAGGCCCAAAGATTCTCCAGAAGCAAAGAGTGATGATGTTAACATCCTTTCAAAATCCCAAATTGATGCTGAGCTATCAAAAGCGAAGGGCATGACAGCTCAAGAAGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCTGAGGCTGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAGTGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 546 0.4432 MFLNDGRLGDNHILEAVVSMKEPKGSDRAAIASYIEEKYRCPPNLRKLLSSKLKLMVESGKIIKEKHKYRITPSSTVTEKRRCSSLIHVEGRPKDSPEAKSDDVNILSKSQIDAELSKAKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAVKALKCKMLHIW. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02262 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca12g02262 181 PANTHER SINGLE MYB HISTONE 4 7 176 IPR044597 GO:0003691
Seca12g02262 181 Gene3D - 10 82 IPR036388 -
Seca12g02262 181 Coils Coil 128 165 - -
Seca12g02262 181 SMART h15plus2 9 68 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca12g02262 181 SUPERFAMILY "Winged helix" DNA-binding domain 11 82 IPR036390 -
Seca12g02262 181 Pfam linker histone H1 and H5 family 13 66 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02262 Seca-Chr12 30771035 30776758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02262 10 181 Single Myb Histone (SMH) Gene Family AT5G67580 48.276 2.21e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02262 K09422 - gmx:100779583 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02262 12 30771035 30776758 Seca12g02262 12 30771035 30776758 PCT