Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02256 ATGGATGGTAATGCTACTGATTCATCCAACAAGAATGTATTGCATGCTTCAAATGTTGGTGAGGACCTAAACATTGAACCTTGTGTTGGGATGGAATTTGAGTCTATTGAAAAAGTTAGAGAATTTTATAAATCTTTTGCTAAAAAGAGGGGTTTTGGAGTACGTGTTCGTTCAACCAAGCCCAAGAGAGCTGTTTTGGTATGTTGCAATGAAGGTCAACATATAGTGAGAAACTCTGAAAATGAAGAAACTCAAGATCACATGGGTCAAACCAAAAGAAAGTGTTCAACTACTCGAAGTGGTTGTCAAGCTTCACTTATTGTTTCAAGAGGCACAATAAAAAGCAATTGGATTATACAATTTTTTAACAATGATCATAACCATGTCATGGTTAGTGTGTCTTTTATGAGGTTTCATAAGAAGATGACTACTGCTGCAAAAAGCCTTGTTGAAAAATTTGAGGGAGAAGGCTTGCCGACGGGAAAGGTTGCTAAAATTTTCAATGATGGTGACTTGGCTTTCTCTAACAGAGATTGTTGGAATCATATCAGAAATTTACGTAGAAAGAATTTAGATGTCGGAGATGCACAAGCTGTTTTTAATTATTGTAAATTTGAGAAAGCAATCGGTAGCCGCTTGGAGGATGAAAGAAAGGAAGATTATGAATCTAGGCATAAATCACGTATCTTGAGTACTGGGTCTAAACTCGAAGAGCATGCTGCATCTATTTATACAAGAAATATGTTTGGTAAATTTCAAGATGAACTTGGGAAGATAAACCAATTTACTAAACAGAAGATTAAAAGAGATGGGCCTAGATATGTCTATCAGGTGTCTAGTTGCTATGATGCTCAAGATACATTCATTGTTGATATAGATTTAGACTCAAAGATTGCTAAATGTGACTGCCTACTATATGAATTTATGGGGATATTATGCCGACACATATTAGTAATTTTTCAAGCAAAAGGTGTTGTTCAGATTCCTAGTCATTTCATTTTGGAACGTTGGACTAAGGATGCTAACAAAGGTATTGAAGTCAATTATACCGAAGATAATATTGATGGTCAATCTAATACATCAAGGATTTTAAGAAGAATGCATGCACAACAAGAAGCAAACATGTTAGTTGATTTGGCTGAGGAGTCTGAGGAGATGTACAAGTTCATTATTTCAGAACTGATTCACACTCATAGGTCAGCTATTGCAATGAATACAAATTCACTTATTGGTGATGAGACAGAGCTTTTGGAGTCAAGCCAAAATTTACAGCATACTTGCATAACCGAGCAAGGAAATGAAGCACCACAATTGCCTATCGGAGACCCACATATATCAAAAACAAAAGGGAGAAAGAAGGATGGGGAGAAAGTGGCTCAAAATTGTAGATTTAAGAGTGGACTTGAAGTATCACTTAGTAAATCATTAGTTAAAAGAAAATCATGCCATGAGTGTGGGGGACATGGTCACAATAGCAGAACTTGCAAGAAAAGAAACCAAAATGATTAA 1509 0.3585 MDGNATDSSNKNVLHASNVGEDLNIEPCVGMEFESIEKVREFYKSFAKKRGFGVRVRSTKPKRAVLVCCNEGQHIVRNSENEETQDHMGQTKRKCSTTRSGCQASLIVSRGTIKSNWIIQFFNNDHNHVMVSVSFMRFHKKMTTAAKSLVEKFEGEGLPTGKVAKIFNDGDLAFSNRDCWNHIRNLRRKNLDVGDAQAVFNYCKFEKAIGSRLEDERKEDYESRHKSRILSTGSKLEEHAASIYTRNMFGKFQDELGKINQFTKQKIKRDGPRYVYQVSSCYDAQDTFIVDIDLDSKIAKCDCLLYEFMGILCRHILVIFQAKGVVQIPSHFILERWTKDANKGIEVNYTEDNIDGQSNTSRILRRMHAQQEANMLVDLAEESEEMYKFIISELIHTHRSAIAMNTNSLIGDETELLESSQNLQHTCITEQGNEAPQLPIGDPHISKTKGRKKDGEKVAQNCRFKSGLEVSLSKSLVKRKSCHECGGHGHNSRTCKKRNQND. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02256 502 MobiDBLite consensus disorder prediction 431 457 - -
Seca12g02256 502 MobiDBLite consensus disorder prediction 482 502 - -
Seca12g02256 502 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 204 394 IPR031052 GO:0006355
Seca12g02256 502 ProSiteProfiles Zinc finger CCHC-type profile. 482 497 IPR001878 GO:0003676|GO:0008270
Seca12g02256 502 Pfam FAR1 DNA-binding domain 41 131 IPR004330 -
Seca12g02256 502 SMART 26again6 299 326 IPR006564 GO:0008270
Seca12g02256 502 ProSiteProfiles Zinc finger SWIM-type profile. 288 324 IPR007527 GO:0008270
Seca12g02256 502 Pfam SWIM zinc finger 290 323 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02256 Seca-Chr12 30645471 30647693 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02256 FAR1 9.8e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02256 - - mtr:112420114 392.504