Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02253 ATGTCTGTTTCCCCAACTCTTGACTTGTACTGCAGTGAGACAACTAGTGATGTGGTTCAATTGGATTCCGACGATGCGGGTTTGAATGTTTCATGGGGGTATTCTGATGGTGATGAAACCTGTCTCTTGAGCTTATTAGACTCCGAACTTGATCAACTACAGGAAAAAACAAAGTCATTAGGACAGCTTAGGAAAAAAACATGGTTGATGAATGCAAGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCAGAGACAGCATATCTTTCTATAAGTTATCTTGATCGCTTCCTTTTATCACACACCTTAACGCAAGAAAAAGCATGGCCTCTGCAATTGTTATCAGTTGCTTGCTTGGCACTGGCAGCGAAAATGGAAGAAATTAAAGTGCCCCTTCTATTGGACCTACAAGTGATCGAGCCTGGTTTTGTGTTTAAGCCAAAAACAGTTCAAAGGATGGAGCTTTTGGTTATGGCTAGTCTTAAGTGGAGATTGCGCACTATAACCCCTTTTGATTTTGCTCATCTTTTAATTGCTAAGCTTTCATGCTCTGCTTCTACATTGGGAGATTTGGATTATATTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTTTAGTGAACAATTCATCAGTCATGGATTTTTTAGAGTTTCCACCCTCCACAATAGCAGCTGCTGCACTGTTAGGGGTATCAAATCAAAATGTTGGTGACCAGAAATCAGGTTGCATCCACAAGAATATAAGCATTGAGATGGTGCAGAAATGTTACAACCTTATGAAGCAGAAACAGATCGTTCGGCGTTCAGAACAATTTTGGCCAAAGAACCTACAATTATTGCCCTTGAGTCCTACATGTGTGCTTGATCATGCAGCTATGCAAGAAAGCAGCGATGCTCACAAGCCCTGA 933 0.4073 MSVSPTLDLYCSETTSDVVQLDSDDAGLNVSWGYSDGDETCLLSLLDSELDQLQEKTKSLGQLRKKTWLMNAREEAINWILKVHAYYSFRPETAYLSISYLDRFLLSHTLTQEKAWPLQLLSVACLALAAKMEEIKVPLLLDLQVIEPGFVFKPKTVQRMELLVMASLKWRLRTITPFDFAHLLIAKLSCSASTLGDLDYIVSRVSDVIIRTCLVNNSSVMDFLEFPPSTIAAAALLGVSNQNVGDQKSGCIHKNISIEMVQKCYNLMKQKQIVRRSEQFWPKNLQLLPLSPTCVLDHAAMQESSDAHKP. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02253 310 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Seca12g02253 310 SUPERFAMILY Cyclin-like 60 172 IPR036915 -
Seca12g02253 310 Pfam Cyclin, N-terminal domain 49 172 IPR006671 -
Seca12g02253 310 FunFam D6-type cyclin 56 173 - -
Seca12g02253 310 CDD CYCLIN_AtCycD-like_rpt2 175 268 - -
Seca12g02253 310 Gene3D - 174 264 - -
Seca12g02253 310 PANTHER CYCLINS 67 273 IPR039361 -
Seca12g02253 310 Gene3D - 58 173 - -
Seca12g02253 310 SMART cyclin_7 78 166 IPR013763 -
Seca12g02253 310 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Seca12g02253 310 Coils Coil 46 66 - -
Seca12g02253 310 Pfam Cyclin, C-terminal domain 175 272 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02253 Seca-Chr12 30583635 30585336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02253 1 273 Core Cell Cycle Gene Families AT1G70210 37.143 2.02e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02253 K18810 - gmx:100799323 451.825